FC925063

Overview
NameFC925063
Unique NameFC925063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2AA_DICDI (Serine/threonine-protein phosphatase 2A catalytic subunit A OS=Dictyostelium discoideum GN=pho2A PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G +FG D++++F  +N L L  R+H++  EGY   HD  ++T+FSAPNYC + GN  A +  +   +K   + F   P
Sbjct:  211 RGAGYTFGKDISEQFNHNNGLTLVARAHQLVMEGYNWCHDQNVVTIFSAPNYCYRCGNLAAIMEID-EKMKHTFLQFDPAP 290          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSI (Putative serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG D++++F   N+L L  R+H++  EGY   H+ K++T+FSAPNYC + GN  + +  +
Sbjct:  220 RGAGYTFGQDISEQFNHSNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVD 285          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP1B_DROME (Serine/threonine-protein phosphatase beta isoform OS=Drosophila melanogaster GN=flw PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG DV  +FL  + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N G  +
Sbjct:  220 RGVSFTFGVDVVSKFLNRHELDLICRAHQVVEDGYEFFARRQLVTLFSAPNYCGEFDNAGGMM 282          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG+D    FL  + +DL  R+H+V ++GYE   + +L+T+FSAPNYC +  N GA +
Sbjct:  225 RGVSYTFGSDKVAEFLMQHDMDLVCRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAMM 287          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP12_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG D    FLQ + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  218 RGVSYTFGPDTVTGFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALM 280          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 207
            RGV  +FG D    FLQ + LDL  R+H+V ++GYE     +L+T+FSAPNYC +  N GA +
Sbjct:  218 RGVSYTFGPDTVTEFLQRHDLDLVCRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALM 280          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSJ (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG D++++F   N+L L  R+H++  EGY   H+ K++T+FSAPNYC + GN  + +  +
Sbjct:  219 RGAGYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVD 284          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A3_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 3 OS=Paramecium tetraurelia GN=Ppn3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNVVTFSAVP 261
            RG G ++G D+T++FL  N L    R+H++  EG +  H+ K IT+FSAPNYC + GN+   +  +   L+ N   F   P
Sbjct:  220 RGAGWTWGCDITEKFLHSNKLKQIARAHQLVMEGIQKVHNQKTITIFSAPNYCYRCGNQACIVEVD-EQLRMNQTQFEPAP 299          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A2_YEAST (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH22 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG D++++F   N L L  R+H++  EGY   H   ++T+FSAPNYC + GN+ A +  +
Sbjct:  282 RGAGFTFGQDISEQFNHTNDLSLIARAHQLVMEGYSWSHQQNVVTIFSAPNYCYRCGNQAAIMEVD 347          
BLAST of FC925063 vs. ExPASy Swiss-Prot
Match: PP2A1_YEAST (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH21 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   19 RGVGLSFGADVTKRFLQDNSLDLFVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 216
            RG G +FG DV+++F   N L L  R+H++  EGY   H   ++T+FSAPNYC + GN+ A +  +
Sbjct:  274 RGAGFTFGQDVSEQFNHTNDLSLIARAHQLVMEGYAWSHQQNVVTIFSAPNYCYRCGNQAAIMEVD 339          
The following BLAST results are available for this feature:
BLAST of FC925063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PP2AA_DICDI3.323e-1138.27Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A4_ORYSI3.323e-1140.91Putative serine/threonine-protein phosphatase PP2A... [more]
PP1B_DROME3.323e-1146.03Serine/threonine-protein phosphatase beta isoform ... [more]
PP12_TOBAC3.323e-1144.44Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP12_ACECL3.323e-1147.62Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_ACECL3.323e-1147.62Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP2A4_ORYSJ4.340e-1140.91Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A3_PARTE4.340e-1138.27Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A2_YEAST4.340e-1140.91Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A1_YEAST4.340e-1142.42Serine/threonine-protein phosphatase PP2A-1 cataly... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA20FM1 TF Citrus clementina cDNA clone KN0AAP3YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925063 ID=FC925063; Name=FC925063; organism=Citrus clementina; type=EST; length=344bp
CGAAGAGGGCCCTTTTAGAGAGGAGTGGGTCTTTCATTTGGTGCTGACGT
GACAAAAAGATTCCTGCAGGATAACAGTCTAGATTTATTTGTGCGATCAC
ACGAAGTTAAGGATGAAGGCTATGAGATTGAGCATGATGGCAAACTCATT
ACGGTATTTTCTGCACCAAATTACTGTGATCAGATGGGTAATAAGGGTGC
TTTTATTCGTTTTGAAGCTCCTACCTTGAAGCCAAATGTTGTTACGTTTT
CAGCTGTGCCTCACCCTGATGTCTAGCCATTGGCATATGCCTACAATTTC
CTACGAACGTTTCTTTACTATATCTCACATCGATGGAACGGCAA
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