FC925069

Overview
NameFC925069
Unique NameFC925069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11753 contig Ccv1_Contig11753:155..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.359e-91
Identity = 167/228 (73.25%), Postives = 191/228 (83.77%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+      D V T A G+ A        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYED------DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.359e-91
Identity = 167/228 (73.25%), Postives = 191/228 (83.77%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYEE      D V T A G+ +        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYEE------DEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 9.611e-91
Identity = 167/228 (73.25%), Postives = 190/228 (83.33%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYE+      D V T A G+ A        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYED------DEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 4.770e-90
Identity = 161/221 (72.85%), Postives = 186/221 (84.16%), Query Frame = 2
Query:    2 ELLDY-EEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            +LLDY EEE+ QAP         +  K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQVT LV+CHTRELA+QI  E+ERFS Y+P +KV+VF+GG++IK  +++LK  CP +VVGTPGRILAL R++  SLKNV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSAT
Sbjct:    9 DLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT 229          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.230e-90
Identity = 164/222 (73.87%), Postives = 191/222 (86.04%), Query Frame = 2
Query:    2 ELLDYEEEDAQ-APDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDYEE++ + A     ++A  +   KG YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KVAVF+GG+ +K  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSAT
Sbjct:    9 ELLDYEEDEVENAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 230          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 8.136e-90
Identity = 160/221 (72.40%), Postives = 186/221 (84.16%), Query Frame = 2
Query:    2 ELLDYEE-EDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDY+E E+ QAP         +  K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KV+VF+GG++IK  +D+LK  CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSAT
Sbjct:    9 ELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT 229          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.367e-89
Identity = 159/221 (71.95%), Postives = 185/221 (83.71%), Query Frame = 2
Query:    2 ELLDYEE-EDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            ELLDY+E E+ Q P         +  K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ EP  GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KV+VF+GG++IK  +D+LK  CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSAT
Sbjct:    9 ELLDYDEDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT 229          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.643e-82
Identity = 153/222 (68.92%), Postives = 177/222 (79.73%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            +LLDYEEE  +  D       G+A K KG Y  IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFV++TLQQ EP  G+V+ + +CHTRELA+QI  E+ERFS YLP +KVAVF+GG+ IK  ++ L N+CP IVVGTPGR+LALAR   L L  V++F+LDECDKM+   DMRRDVQEI KMTP  KQVMMFSAT
Sbjct:    5 QLLDYEEEQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSAT 226          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.803e-82
Identity = 155/225 (68.89%), Postives = 182/225 (80.89%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKANGEAAKKG----YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVT-ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            +LLDYE+E+     +V    N EA KK     YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ EP+       LV+CHTRELA+QI  E+ERFS Y+P +KVAVF+GG+ I+  ++ LK+  P IVVGTPGRILAL R+K L+LK ++HF+LDECDKMLE LDMRRDVQEIF+ TPH KQVMMFSAT
Sbjct:    6 DLLDYEDEEQTETTAVE---NQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSAT 227          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.016e-81
Identity = 155/240 (64.58%), Postives = 183/240 (76.25%), Query Frame = 2
Query:    2 ELLDYEEEDAQAPDSVATKA----NGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            +L+DY +E+ Q  D+ AT A    NG+AAKKG              YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQVMMFSAT
Sbjct:    6 DLIDYSDEELQTTDAAATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSAT 245          
The following BLAST results are available for this feature:
BLAST of FC925069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UAP56_HUMAN7.359e-9173.25Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=B... [more]
UAP56_CANFA7.359e-9173.25Spliceosome RNA helicase BAT1 OS=Canis familiaris ... [more]
UAP56_BOVIN9.611e-9173.25Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT... [more]
DDX39_HUMAN4.770e-9072.85ATP-dependent RNA helicase DDX39 OS=Homo sapiens G... [more]
UAP56_CHICK6.230e-9073.87Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=... [more]
DDX39_MOUSE8.136e-9072.40ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]
DDX39_RAT2.367e-8971.95ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
UAP56_CAEEL1.643e-8268.92Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
UAP56_DROME2.803e-8268.89ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
SUB2_ASPOR9.016e-8164.58ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP03FM1 TF Citrus clementina cDNA clone KN0AAP1YP03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925069 ID=FC925069; Name=FC925069; organism=Citrus clementina; type=EST; length=661bp
TGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCG
CTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACAC
AGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAAT
TGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATAC
CTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATG
GGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCCAAA
TCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTT
ATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATC
AAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAAGATTT
GCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATAC
TAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTT
ATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACATGAGAAGAGA
TGTGCAAGAGATTTTCAAGATGACTCCTCATGACAAGCAAGTAATGATGT
TTTCAGCAACA
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