FC925069

Overview
NameFC925069
Unique NameFC925069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11753 contig Ccv1_Contig11753:155..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 75/185 (40.54%), Postives = 109/185 (58.92%), Query Frame = 2
Query:  110 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            F DF +K ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GKTA FV+  L++  P   +V  L+L  TRELA Q     +    +L  I V V  GG  ++   D+L+ + P  I+VGTPGRIL LA      L     F++DE DK+L S +    ++++ +  P D+Q+M+FSAT
Sbjct:   49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHL-GINVMVTTGGTTLR--DDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLL-SPEFTIVIEQLLQFHPKDRQIMLFSAT 229          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 2
Query:  110 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            F DF L+ ELL  I ++GFE PS +Q E IP A+   D++ +AK+G GKTA FV+ TL+  +P   ++ AL++  TRELA Q          +   I   V  GG N++   D+++ NE   ++VGTPGR+L LA  K   L     F++DE DKML S D +  V++I    P + Q ++FSAT
Sbjct:   31 FEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLR--DDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML-SRDFKSLVEQILSFLPQNHQSLLFSAT 211          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.753e-29
Identity = 73/189 (38.62%), Postives = 113/189 (59.79%), Query Frame = 2
Query:   98 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            H+  F D  + PEL RA    GF+ PS++Q E IP A+ G D+I  A++G GKTA F L  LQ    NP    ALVL  TRELAYQI  +     + +  ++ AV  GG+++ + + +  ++ P I+V TPGR++  L   K  SLK++++ ++DE D++L+ LD    + +I K+ P ++   +FSAT
Sbjct:   36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGI-GVRTAVLVGGMDM-MSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLD-LDFGPIIDKILKVIPKERNTYLFSAT 221          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.753e-29
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 2
Query:  125 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI         ++ +I+     GG N++     L+ E PQ+VVGTPGR+  + + + L   N++ FILDE D+ML S      + +IF++ P   QV++ SAT
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVREDMKALQ-EGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSAT 207          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 77/218 (35.32%), Postives = 121/218 (55.50%), Query Frame = 2
Query:   11 DYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            D++ +    P     +     A KG      + F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ + +   +  ++L  TRELA Q     +    +L  I+V V  GG ++K   D+++   P  ++VGTPGRIL L +     LKN    ++DE DK+L S + +  +QE+ +  P ++Q++MFSAT
Sbjct:   99 DWKAQLKLPPQDTRYRTEDVTATKG------NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLL-SPEFQPSIQELIRYLPSNRQILMFSAT 306          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 71/185 (38.38%), Postives = 111/185 (60.00%), Query Frame = 2
Query:  110 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ +P    +  ++L  TRELA Q     +    YL +I+V V  GG ++K   D+++   P  ++VGTPGRIL L R     LK+    ++DE DK+L + + +  ++++    P ++Q++MFSAT
Sbjct:  149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYL-NIQVMVSTGGTSLK--DDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLL-APEFQPSIEQLIHFLPANRQLLMFSAT 329          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 74/185 (40.00%), Postives = 111/185 (60.00%), Query Frame = 2
Query:  110 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            F DF LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++  LQ  +P   +V AL+L  TRELA Q          ++   +  V  GG +++   D+++   P  I+VGTPGR+L LA  K + L     F++DE DKML S + +  +++I +  P ++Q ++FSAT
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGTSLR--DDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKML-SREFKGIIEQILEFFPPNRQALLFSAT 212          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 75/184 (40.76%), Postives = 106/184 (57.61%), Query Frame = 2
Query:  110 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            F D  L+ ELLR I   GFE PS +Q   I   + G DVI QA+SG GKTA F ++ LQQ + +  +  AL+L  TRELA QI         Y+  +      GG N++    +L++ C  +VVGTPGR+  +   K L  + ++ F+LDE D+ML S   +  +Q++FKM P D QV++ SAT
Sbjct:   32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM-KVHSHACIGGTNVREDARILESGC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEML-SRGFKDQIQDVFKMLPPDVQVILLSAT 212          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 73/179 (40.78%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  125 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN  Q  AL+L  TRELA QI         ++ +++     GG +++     L+ + PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML S      + +IF++ P   QV++ SAT
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSAT 207          
BLAST of FC925069 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 73/179 (40.78%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  125 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 661
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN  Q  AL+L  TRELA QI         ++ +++     GG +++     L+ + PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML S      + +IF++ P   QV++ SAT
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSAT 207          
The following BLAST results are available for this feature:
BLAST of FC925069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_BOTFB1.614e-2940.54ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DHH1_ASHGO1.614e-2940.54ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
RRP3_CRYNE2.753e-2938.62ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]
IF4A_ASPFU2.753e-2943.02ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
RH6_ORYSJ4.696e-2935.32DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
RH12_ORYSJ8.009e-2938.38DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DHH1_CANAL8.009e-2940.00ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
IF4A_DROME1.046e-2840.76Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_SCLS11.366e-2840.78ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_BOTFB1.366e-2840.78ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YP03FM1 TF Citrus clementina cDNA clone KN0AAP1YP03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925069 ID=FC925069; Name=FC925069; organism=Citrus clementina; type=EST; length=661bp
TGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCG
CTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACAC
AGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAAT
TGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATAC
CTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATG
GGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCCAAA
TCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTT
ATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATC
AAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAAGATTT
GCTGAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATAC
TAGCTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTT
ATCCTTGATGAATGCGATAAGATGCTGGAATCTCTTGACATGAGAAGAGA
TGTGCAAGAGATTTTCAAGATGACTCCTCATGACAAGCAAGTAATGATGT
TTTCAGCAACA
back to top