FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:24..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 67/210 (31.90%), Postives = 111/210 (52.86%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN----------WGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            + GACG+ ++ L       + G   L+KDG GCG+C+Q+RC     CSG    VI+TD+N+   +   F +S  AF A++   +  ++   G++D++++RVPC+Y    +   VE+ S  P Y+A+ V Y+ G  ++V +D+ +   S           W  M  ++G++W  DT+    G    R    S   GK + A  V+PADW+P
Sbjct:  111 NGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVSLYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGS-NPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWRLDTNHPLQGPFSLRITNES---GKTLIADQVIPADWQP 316          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 74/211 (35.07%), Postives = 113/211 (53.55%), Query Frame = 2
Query:  113 QASALSSGACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-------LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQV-GSSNWGYMSRNYGAVWDTSRVPNGALQ--FRFVVTSXYDGKWIWAKNVLPADWK 712
            Q      GACGY S +        +AAG PSL+K+G GCG+C+Q++C     CSG+   V++TD       LN +    F +S  AF A++N+G G  +   GV+ ++YKRVPC +   N+A +V+  S  P YLA+ V Y  G  ++ A+ + +  G   W  M +++GA W  +      L   F   +TS   GK + A NV+P+ W+
Sbjct:   57 QGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITDSCPGGVCLNEA--AHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFA-MNVAFKVDAGS-NPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSG-SGKVLVANNVIPSGWQ 262          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.130e-26
Identity = 61/199 (30.65%), Postives = 105/199 (52.76%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + GACGY ++  +   G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ Q++   G ++++++RV C+Y +        E +  PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GAVW  DT     G    R+        ++   ++V+P  WK
Sbjct:   60 NGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEAVTVTITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTGPFTVRYTTEGGTKSEF---EDVIPEGWK 255          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 65/201 (32.34%), Postives = 116/201 (57.71%), Query Frame = 2
Query:  128 SSGACGYGSLALS-FNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            + G CGY  +  + FN       VP ++KDG GCG+CF+++C  P  CSGK   V +TD+N+       F ++  AF A++ +G+ + + K G++D++++RV C+Y    +   +E+    PNYLA+ V Y  G  ++VA+D+ + GS  +  +  ++GA+W  D+ +   G +  +  +T+    K ++  +V+PA WKP
Sbjct:   68 NGGGCGYKDVNKAPFNSMGACGNVP-IFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-GSKVTFHLEKGC-NPNYLALLVKYVDGDGDIVAVDIKEKGSDTYEPLKHSWGAIWRKDSDKPIKGPITVQ--LTTEGGTKTVY-DDVIPAGWKP 262          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 72/201 (35.82%), Postives = 110/201 (54.73%), Query Frame = 2
Query:  134 GACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH---SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQ-VGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            GACGYG+ +A       ++AG PSL+K G GCGAC+Q++C + + CS     V++TD           F +S  AF A++  G+   +  +G + + YK+V C Y  + +  +V++ S   N  AV V Y  G  E+  +++ Q + S  W  MS+++GAVW  D S      L  R  VTS   GK + A NV+PA+W+P
Sbjct:   66 GACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGS-NANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLR--VTSLESGKTVVASNVIPANWQP 263          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + GACGY  +      G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ Q +   G ++++++RV C+Y +        E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GAVW  DT     G    R+       G+   A++V+P  WK
Sbjct:   62 NGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEPVTVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVWRVDTPDKLTGPFTVRYTTEGGTKGE---AEDVIPEGWK 257          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.632e-25
Identity = 67/204 (32.84%), Postives = 113/204 (55.39%), Query Frame = 2
Query:  128 SSGACGYGSLALS-FNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFV----VTSXYDGKWIWAKNVLPADWK 712
            + G CGY  +    FN       +P ++KDG GCG+CF+++C  P  CSGK   V +TD+N+       F ++  AF A++ +G+ + + K G++D++++RV C+Y +  +   +E+    PNYLA+ V Y  G  ++VA+DV + GS  +  +  ++GA+W  D+ +   G L  R        S YD       +V+PA+WK
Sbjct:   69 NGGGCGYKDVNKPPFNSMGACGNIP-IFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-DSKVTFHLEKGC-GPNYLALLVKYVDGDGDIVAVDVKEKGSDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSVYD-------DVIPANWK 262          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.747e-25
Identity = 67/205 (32.68%), Postives = 107/205 (52.20%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQT--DFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN------WGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYD-GKWIWAKNVLPADWKP 715
            + GACG+            + G   L+KDG GCG+C+++RC     CSG+   VI+TD+N+       F +S  AF  L+  G    +   G++D+E+ RVPCE+    +   VEE S  P Y AV V Y+ G  ++V +D+ +  +++      W  M  ++G++W      N  LQ  F +    + GK + A NV+PA+W+P
Sbjct:   74 NGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPFHFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYS-NPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLD--TNHRLQAPFSIRIRNESGKTLVANNVIPANWRP 275          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 59/199 (29.65%), Postives = 103/199 (51.76%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + GACGY  +  +   G    G   ++KDG GCG+CF+++C  P  CSG+   V +TD N        F +S  AF +++ +G+ +++   G ++++++RV C+Y +        E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GA+W  DT     G    R+        ++   ++V+P  WK
Sbjct:   66 NGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKCSKPESCSGEPITVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKAEF---EDVIPEGWK 261          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 62/199 (31.16%), Postives = 98/199 (49.25%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD--FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + GACGY  +      G    G   ++K G GCG+CF+++C  P  CSG+   V +TD N        F +S  AF A++ +G  Q +   G ++++++RV C+Y          E    PNYLA+ V Y  G  ++VA+D+ + G   W  +  ++GA+W  DT     G    R+       G    A++V+P  WK
Sbjct:   60 NGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEG---GTKTEAEDVIPEGWK 255          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPB7_ORYSJ2.973e-2731.90Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB5_ORYSJ3.883e-2735.07Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAL1_LOLPR1.130e-2630.65Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
EXB11_MAIZE5.608e-2632.34Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB2_ARATH7.324e-2635.82Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
MPAH1_HOLLA9.565e-2631.66Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
EXB10_MAIZE1.632e-2532.84Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXPB4_ORYSJ4.747e-2532.68Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAP1_PHAAQ6.200e-2529.65Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAP1_PHLPR1.058e-2431.16Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
back to top