FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 67/205 (32.68%), Postives = 107/205 (52.20%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN------WGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYD-GKWIWAKNVLPADWKP 715
            + GACG+ ++         + G   ++KDG GCG+C+Q+RC     CSG    VI+TD+N+    +  F +S  AF A++  G    +   G++D++++RVPC Y    +   VEE S  P Y AV V Y+    ++V +D+ +  S+       W  M  ++G++W      N  LQ  F +    D GK + A NV+PA+W P
Sbjct:   63 NGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPSCSGNIETVIITDMNYYPVARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGS-NPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLD--SNHRLQAPFSLRIRSDSGKTLVANNVIPANWSP 264          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 68/208 (32.69%), Postives = 110/208 (52.88%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            ++    + GACGYGSL  +      + +  P L+KDG GCGAC++++C +  +CS +   VI+TD     L    +T F +S  AF  ++  G G  +   G + V Y+R  C+Y  +N+A RV E S    +L++ V ++ GQ ++ +M + Q  S  W  M   +GA W   R P     F   +T+    K + A++V+P +WKP
Sbjct:   59 AEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTN-FWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPLVG-PFSVRLTTLSAQKALTARDVIPRNWKP 264          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 66/211 (31.28%), Postives = 112/211 (53.08%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQ--FRFVVTSXYDGKWIWAKNVLPADWKP 715
            ++    S GACGYGSL  +      + A  P L+K G GCGAC+++RC + T+CS +   +I TD + S        T F +S  AF  ++  G    I   G++++ Y+R  C+Y+ +N+A  V   S    +L++ + Y+ G+ ++ +M + Q GS  W  M   +GA W    +  G L+  F   +T+  + K + A +V+P++W P
Sbjct:   51 AEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGS-TDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW---CIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVP 257          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 63/198 (31.82%), Postives = 101/198 (51.01%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN--HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            GACGY  +      G  A G   ++KDG GC AC++++CK P  CSG+   V +TD N  H     F +S +AF A++ +G+   + K G + ++++RV C+Y +        E     +YLA+ V Y  G   +VA+D+    S  +  M  ++GA+W  D  +   G    R    +   G  +   +V+PA+WKP
Sbjct:   40 GACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKCKEPVECSGEPVLVKITDKNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIWRIDPKKPLKGPFSIRL---TSEGGAHLVQDDVIPANWKP 234          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 70/202 (34.65%), Postives = 107/202 (52.97%), Query Frame = 2
Query:  128 SSGACGYG-SLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL---NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQ--FRFVVTSXYDGKWIWAKNVLPADWKP 715
            + GACGYG ++A       ++AG PSL+KDG GCGAC++++C +P LC+ K  +V+++D           F +S +AF AL+ +GKG  +  LG + V YKR  C++    +A+ V ++   P Y++  V +  G      ++V   G   +  M     AVW  S  P   L+  F   +TS   GK I AK V+P  W P
Sbjct:   51 TGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKCDHP-LCTKKPIKVMISDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHV-DAGANPYYMSFAVKFANGDGNFACIEVQPAG-GQYMKMEEMRSAVWRLS--PGVPLKGPFNIRLTSAVSGKKIIAKGVIPEKWSP 247          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 66/204 (32.35%), Postives = 106/204 (51.96%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNH--SNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN-----WGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + GACG+ +          + G   L++DG GCGAC+Q+RC N   CSG+   VI+TD+N+    +  F +S  AF A++  G    +   G++D++++RVPC ++   +   VE  S  P YLAV V +      +V +DV +   S      W  M R++G++W  D +    G    R V  S   G+ + A  V+PA+W+
Sbjct:   50 NGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGS-NPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQGPFSLRMVSES---GQTVIAHQVIPANWR 249          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 65/201 (32.34%), Postives = 108/201 (53.73%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGV--PSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDL---NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQ--FRFVVTSXYDGKWIWAKNVLPADWKP 715
            GACGYG+L +     H   G   P L+K+G GCGAC+++RC + ++CS +   VI+TD         T F +S   F  L+  G+   +   G++ V Y+R  C+Y+ +N+A  V E S    +L++ V ++ G+ ++ +M + Q G+  W  M   +GA W    +  G L+  F   +T+   GK + A +V+P +W P
Sbjct:   55 GACGYGTL-VDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGS-TDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW---CIIGGPLKGPFSIKLTTLSAGKTLSATDVVPRNWAP 250          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.205e-22
Identity = 68/214 (31.78%), Postives = 106/214 (49.53%), Query Frame = 2
Query:  134 GACGYG-SLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN--------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVG---SSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXY-DGKWIWAKNVLPADWKP 715
            GACGY  ++        +AAG P +Y  G GCG+C+++ C     CSG    V++TD                 +    F +S  AF A++  G+   +   G++ ++Y RV CE+    L   V +S   PNYLA+ V Y    +++ A+D+  +G   S +W  M +++GAVW   R+ +G ALQ  F V   +  G+   A N +PA W P
Sbjct:   58 GACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTF-VVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVW---RLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWNP 267          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 66/218 (30.28%), Postives = 110/218 (50.46%), Query Frame = 2
Query:   86 HQTKVAYFSQASALSS--GACGYGSLA-LSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            H     ++  A    S  GACGYG+L  +      + A  P L+K G GCGAC+++RC + ++CS +   VI+TD     +    +T F +S  AF  L+  G G  +   G + V Y+R  C+Y  +N+A  V E S    +L++ V ++ G  ++ +M + Q  S+ W  M   +GA W  +  P     F   +T+    + + A++V+P +W P
Sbjct:   46 HPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASICSRRAVTVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGS-TTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVG-PFSVRLTTLTTRQTLSAQDVIPKNWTP 261          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 66/202 (32.67%), Postives = 99/202 (49.01%), Query Frame = 2
Query:  128 SSGACGYGS-LALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTD-----LNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWKP 715
            + GACGYGS +A       ++AG PSL+ +G GCG C+Q+ C     CSG    V +TD        S      +S +A  AL+  G+   +   GV+ V YKR  C Y+  N+  R+ ++   P Y++  V Y+ G  ++  +++   G S +  M     AVW  +        F   +TS    K I A NV+PA+WKP
Sbjct:   50 TGGACGYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRM-DAGANPYYISFVVEYENGDGDLSNVEIQPAGGS-FISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWKP 249          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPB6_ORYSJ1.058e-2432.68Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB17_ORYSJ2.356e-2432.69Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB1_ARATH5.248e-2431.28Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
MPAC1_CYNDA1.169e-2331.82Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXPB5_ARATH1.527e-2334.65Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 ... [more]
EXPB2_ORYSJ3.402e-2332.35Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ARATH5.803e-2332.34Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB12_ORYSJ2.205e-2231.78Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ2.880e-2230.28Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB4_ARATH2.438e-2132.67Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
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