FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 73/208 (35.10%), Postives = 109/208 (52.40%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            GACGYG+L  S  G   AA   +L+ DG GCG CFQ+ C K+P   SGK T V  T+L   N              +T F ++  AFM L+         + G++ V Y+RVPC+ ++  +  + + +S    +L + V+  GG  ++ +M V +   +NW  MS N+GA +   S +   +L FR  VTS   G+ I+A NV PA+W
Sbjct:   56 GACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLA-------YWRAGIIPVAYRRVPCQ-RSGGMRFQFQGNSY---WLLIFVMNVGGAGDIKSMAV-KGSRTNWISMSHNWGASYQAFSSLYGQSLSFR--VTSYTTGETIYAWNVAPANW 249          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 68/217 (31.34%), Postives = 98/217 (45.16%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN------------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            AS    GACGYG+L  S  G   AA   +L+KDG GCG C+QMRC     C      + +T  N                  +  +  F +S  AFM +++        + G+V V Y+RVPC  +   L   ++ +   P +L   V+   G  ++  M V   G   W  MS N+GA +   +++   AL F+  VTS   G+ I A  V PA W
Sbjct:   50 ASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTASCYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMAD-------WRAGIVPVMYRRVPCA-RAGGLRFALQGN---PYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFK--VTSYTTGQTILAAGVTPASW 253          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 68/230 (29.57%), Postives = 104/230 (45.22%), Query Frame = 2
Query:   62 ATACDRCVHQTKVAYF---SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCSGKGTRVILTDLN--------HSNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            A AC R V Q+  A F      S    GACGYG+L  +  G + AA   +L+ DGA CGAC+ + C       C   G  + +T  N         SN   +    R    +S    +   + + G+V V YKRVPC+   ++  +R   S    +Y  +  +   G + +VA    +  ++ W  MSRN+GA W ++    G  Q    +    DG+ + A NV P++W
Sbjct:   20 AFACKRSVAQSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQ---RSGGIRFAISGH--DYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAG--QSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 64/215 (29.77%), Postives = 104/215 (48.37%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            AS    GACGYG+L  +  G + AA    L+ DGA CG+C+++RC N    C      V  T+L   N++   D           F ++  AF+ +        + + G+V V Y+RVPC  K   +   +   S   N + V  +   G  + V++   +  S+ W  MSRN+G  W ++   +G +L F+  V+   DG+ + + NV+PA W+
Sbjct:   42 ASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIG-------VYRAGIVPVSYRRVPC-VKKGGIRFTINGHSYF-NLVLVTNVAGPGDVQSVSI---KGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVS---DGRTVTSNNVVPAGWQ 241          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 65/206 (31.55%), Postives = 99/206 (48.06%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL---NHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            GACGYG+L     G   AA   +L+ DG  CGAC+++ C ++P  C     ++  T+    N+S  TD         F +S   F+ ++         K GVV V Y+R+PC   ++   V+  E+   P +L V +   GG  ++  + V +   + W  M +N+G  W TS V  G  L FR V T+    K  W  NV+P +W
Sbjct:   77 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDLWCNPPQKHFDLSLAMFLKIAK-------YKAGVVPVRYRRIPC---SKTGGVKF-ETKGNPYFLMVLIYNVGGAGDIKYVQVKE-NKTGWITMKKNWGQNWTTSTVLTGQGLSFR-VTTTDGITKDFW--NVMPKNW 267          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL---NHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            GACGYG+L     G   AA   +L+ DG  CGAC+++ C ++P  C     ++  T+    N+S  TD         F +S   F+ ++         K GVV V Y+R+PC   ++   V+  E+   P +L V +   GG  ++  + V +   + W  M +N+G  W T  V  G  L FR V TS    K  W  NV+P +W
Sbjct:   71 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDLWCNPPQKHFDLSLAMFLKIAK-------YKAGVVPVRYRRIPC---SKTGGVKF-ETKGNPYFLMVLIYNVGGAGDIKYVQV-KGNKTGWITMKKNWGQNWTTITVLTGQGLSFR-VTTSDGITKDFW--NVMPKNW 261          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 65/218 (29.82%), Postives = 99/218 (45.41%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTD----------------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGS-SNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            S AS    GACGYG+L     G + AA   +L+ +G  CGACF+++C++       G  +I+T  N     +                F +S   F  ++         K GVV V Y+RVPC  +   +   +   S    +  V V   GG  ++    VA  GS + W  MSRN+G  W ++ + NG AL F+   +   DG+ + + N+ PA W
Sbjct:   41 SDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGA-IIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQ-------YKAGVVPVSYRRVPC-MRRGGIRFTINGHSY---FNLVLVTNVGGAGDV--HSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTAS---DGRTVVSNNIAPASW 241          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 64/212 (30.19%), Postives = 95/212 (44.81%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLNHSNQTDFVISS----------RAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            S AS    GACGYG L  +  G   AA   +L+  GA CGACF + C    T     GT + +T  N     ++ +S           R F       +   + + G+V V Y+RVPC+ ++  +   V   S    Y  + ++   G +  VA    +   + W  MSRN+GA W + +R+   AL FR       DG+ + A +V PA W
Sbjct:   36 SDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFC-PPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQ-RSGGIRFAVNGHS----YFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFR---VQADDGRVVTAADVAPAGW 238          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 64/215 (29.77%), Postives = 94/215 (43.72%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            S AS    GACGYG+L  +  G   AA   +L+ +G  CGACF++RC     C      V  T+L   N              +  F ++  AF  ++         + GVV V+Y+RV C  K   +   +   S    +  V V   GG  ++ A+ V +   S W  MS N+GA W      +G  L FR   +   DG+ + + NV P+ W
Sbjct:   38 SDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQ-------ARAGVVPVQYRRVACA-KQGGIRFTITGHSY---FNLVLVTNVGGAGDVTAVSV-KGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTAS---DGRTVTSDNVAPSGW 237          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXB13_ORYSJ (Expansin-B13 OS=Oryza sativa subsp. japonica GN=EXPB13 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 51/199 (25.63%), Postives = 85/199 (42.71%), Query Frame = 2
Query:  128 SSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHS--NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVW--DTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            +SGACGY  +  +   G  + G   ++KDG GCG+CF+++C  P  CS K   + +TD+N        F +   AF A++  GK +++LK                                       Y  G  ++V +++ + GS  W  +  ++GA+W  DT +   G    R        G+ I A++ +P  WK
Sbjct:   60 NSGACGYKDVDKAPFLGMNSCGNDPIFKDGKGCGSCFEIKCSKPKACSDKPVLIHVTDMNDEPIAAYHFDLFGLAFGAMAKDGKDEELLK---------------------------------------YVAGDGDVVEVEIKEKGSEEWKALKESWGAIWRIDTPKPLKGPFSVRVTTEG---GEKIIAEDAIPDGWK 216          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPA7_ARATH6.639e-1935.10Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP30_ORYSJ8.116e-1731.34Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXPA3_ORYSJ5.261e-1629.57Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ORYSJ1.999e-1529.77Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP26_ARATH4.453e-1531.55Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH2.210e-1431.55Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP15_ARATH2.210e-1429.82Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA8_ORYSJ4.924e-1430.19Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ4.924e-1429.77Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB13_ORYSJ4.924e-1425.63Expansin-B13 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
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