FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 61/215 (28.37%), Postives = 104/215 (48.37%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTD-------LNHSN-------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            AS    GACGYG+L     G + AA   +L+ +G  CGAC++M+C  +P  C G    V  T+       L++ N          F ++  AF+ ++         + G+V V ++RVPC  K   +   +   S    +  V +   GG  ++ A+ +    + +W  MSRN+G  W ++   N  +L F+ V TS  DG+ + + +V P++W+
Sbjct:   43 ASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQ-------YRAGIVPVSFRRVPC-MKKGGIRFTINGHSY---FNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQ-VTTS--DGRTLVSNDVAPSNWQ 243          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 65/214 (30.37%), Postives = 100/214 (46.73%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTR------VILTDLNH--------SNQTDFVISSRAFMALSNQ-GKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            AS    GACGYG+L     G + AA   +L+ +G  CGACF++RC       G G+       V++T  N         S+   +    RA   +S    +   + K G+V V Y+RV C+ K     +R   +     +  V V   GG  ++ A+ V    S+ W  +SRN+G  W ++ + +G AL FR V T   DG+ + + N +P  W
Sbjct:   77 ASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCD----AGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKG---GIRFTINGHS-YFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFR-VTTG--DGRSVVSNNAVPRGW 279          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 60/216 (27.78%), Postives = 99/216 (45.83%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    GACGYG+L     G   AA   +L+  G  CGACF+++C+ +P  C      V  T+    N +   D           F ++  AF+ ++         + G+V V ++RVPCE K   +   +   +  P +  V +   GG  ++ A+ +    +  W  MSRN+G  W ++    G     F VT   DG+ + + +V+P DW+
Sbjct:   43 ADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQ-------YRAGIVPVAFRRVPCE-KGGGIRFTI---NGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQ-SLSFQVTDS-DGRTVVSYDVVPHDWQ 245          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 62/216 (28.70%), Postives = 99/216 (45.83%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLNHSN--------------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            + AS    GACGYG+L     G + AA   +L+  G  CGACFQ++C  +P  C G    V  T+    N              Q  F ++   F+ ++         K GVV V+Y+RV C  K     +R   +     +  V +    G  +++++ +    ++ W  MSRN+G  W ++   +G AL F+ V TS  DG+ + + N  P +W
Sbjct:   40 ADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQ-------YKAGVVPVQYRRVACRRKG---GIRFTINGHS-YFNLVLITNVAGAGDVISVSIKGT-NTRWQSMSRNWGQNWQSNAKLDGQALSFK-VTTS--DGRTVISNNATPRNW 240          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 61/215 (28.37%), Postives = 97/215 (45.12%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            AS    GACGYG+L     G + AA   +L+ +G  CGACF++RC+N       G+ +++T  N                +  Q  F +S   F  ++         + G+V V Y+RVPC  +       +  +    +Y  + ++   G    V   + +   + W  MSRN+G  W ++   NG +L F+ V TS  DG+ I + NV  A W
Sbjct:   40 ASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGS-IVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQ-------YRAGIVPVAYRRVPCVRRG-----GIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFK-VTTS--DGQTIVSNNVANAGW 238          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 61/219 (27.85%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILTDLN----HSNQTD------------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    GACGYG+L     G + AA   +L+ +G  CG+CF+++C N P  C      +++T  N    + NQ              F ++   F++++         K G+V V Y+R+PC  K     +R   +  K  +  V V    G  +++ + V +  ++ W  +SRN+G  W ++ +  G +L FR V TS  DG+   + N+ P++W+
Sbjct:   43 ADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAK-------YKAGIVPVSYRRIPCRKKG---GIRFTINGFK-YFNLVLVTNVAGAGDVIKVSV-KGSNTQWLDLSRNWGQNWQSNALLVGQSLSFR-VKTS--DGRSSTSNNIAPSNWQ 246          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 62/216 (28.70%), Postives = 95/216 (43.98%), Query Frame = 2
Query:  119 SALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLN-------HSN---------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S    GACGY   +    G    A    L+  GAGCGAC++++C  +P  C      +++T  N        SN         +  F +S  AF+ ++ +       K G+V + Y+RVPC  K   +   +   +  P +  V V   GG  ++  + V       W  + RN+G  W TS V  G +L FR V+T  +     W  +VLP DW+
Sbjct:   56 SGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQE-------KAGIVPISYRRVPC-VKVGGIRYTI---TGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFR-VMTGDHRKATSW--HVLPPDWQ 257          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 57/219 (26.03%), Postives = 100/219 (45.66%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    GACGYG+L     G + AA   +L+ +G  CGACF+++C N P  C      +++T  N                +  +  F ++   F+ ++         + G+V V Y+RVPC  +     +R   +  +  +  V +    G  ++V   V +   + W  +SRN+G  W ++ V  G AL FR    +  D +   + N++P++W+
Sbjct:   42 SDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGHR-YFNLVLITNVAGAGDIVRASV-KGSRTGWMSLSRNWGQNWQSNAVLVGQALSFR---VTGSDRRTSTSWNMVPSNWQ 245          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 59/207 (28.50%), Postives = 91/207 (43.96%), Query Frame = 2
Query:  134 GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN-PTLCSGKGTRVILT-----DLNHSN-------QTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            GACGYG L     G   AA   +L+ +G+ CGAC+++ C++ P  C     ++  T     D    N       Q  F +S   F+ ++         K GVV V+++RVPC      +     E    P++L +     GG   + AM +     + W  M +N+G +W T  V  G  L FR   +     ++I   +V P DWK
Sbjct:  109 GACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDNWCNPPQKHFDLSQPMFLKIAK-------YKAGVVPVKFRRVPC----AKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGT-RTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFI---DVTPPDWK 300          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 63/214 (29.44%), Postives = 95/214 (44.39%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLC-SGKGTRVILTDLNHSNQTD---------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            + + A   GACGY +   +  G H AA    L++ G  CG C+Q+RC    +P  C  G    V  T+   +N  +         F +SS AF  ++ +G        G+V V Y+RV C+ +     VR     Q  N+  V +   GG   + ++ V       W  M+RN+GA W +S    G  L F+  +T   D K     NV+P+ W
Sbjct:   38 NDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNNNGWCNLPRHHFDMSSPAFFRIARRGNE------GIVPVFYRRVGCKRRG---GVRFTMRGQ-GNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLT---DSKTQTFLNVVPSSW 238          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPA8_ARATH6.431e-1428.37Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA5_ORYSJ2.444e-1330.37Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ARATH2.444e-1327.78Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP14_ARATH2.444e-1328.70Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA1_ARATH4.168e-1328.37Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA9_ARATH5.444e-1327.85Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXP32_ORYSJ7.110e-1328.70Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA4_ARATH1.213e-1226.03Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP24_ARATH1.213e-1228.50Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP12_ARATH1.213e-1229.44Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
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