FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:24..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 61/215 (28.37%), Postives = 98/215 (45.58%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKP-NYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            AS    GACGYG+L     G + AA   +L+ DGA CG+C+++RC N  + C      V  T+    N+   +D           F ++  AF+ ++         + G+V V ++RVPC  K     VR   +     N + V  +   G    V++  ++ G   W  MSRN+G  W ++   +G     F VT+  DG+ + + NV    W+
Sbjct:   37 ASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQ-------YRAGIVPVSFRRVPCVKKG---GVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTG---WQPMSRNWGQNWQSNAFLDGQ-SLSFQVTAS-DGRTVTSNNVAHPGWQ 236          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 61/215 (28.37%), Postives = 98/215 (45.58%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKP-NYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            AS    GACGYG+L     G + AA   +L+ DGA CG+C+++RC N  + C      V  T+    N+   +D           F ++  AF+ ++         + G+V V ++RVPC  K     VR   +     N + V  +   G    V++  ++ G   W  MSRN+G  W ++   +G     F VT+  DG+ + + NV    W+
Sbjct:   37 ASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQ-------YRAGIVPVSFRRVPCVKKG---GVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTG---WQPMSRNWGQNWQSNAFLDGQ-SLSFQVTAS-DGRTVTSNNVAHPGWQ 236          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 59/218 (27.06%), Postives = 106/218 (48.62%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCS-GKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPN-GALQFRFVVTSXYDGKWIWAKNVLPADW 709
            S  +    GACGYG+L  +  G + AA   +L+ DGA CGAC+ + C     T C  G    +  T+L   N++ ++D           F +S  A+ +++       I + G+V V +KRVPC+   ++  +R   S +  +Y  +  ++  G + +VA    +   ++W  MSRN+G  W ++   N  +L F+  +    D + +   N+ P++W
Sbjct:   34 SDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIA-------IYQAGIVPVNFKRVPCQ---KSGGIRFTISGR--DYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLD---DAREVTVWNIAPSNW 236          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 61/215 (28.37%), Postives = 98/215 (45.58%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLCSGKGTRVILTDLNH--------SNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMV-AMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    GACGYG L     G   AA   +L+ DGA CG C+++ C   + P  C   G  V +T  N         S+   +    R    ++    +   I + G++ V Y+RVPC  K       V  +    +Y  + ++     T ++ +MDV    S++W  M RN+GA W + S +    L FR    +  DG+ +  +N++P+ WK
Sbjct:   63 ADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCR-PGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKG-----GVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFR---VTNMDGQTLVFRNIVPSGWK 268          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 61/214 (28.50%), Postives = 97/214 (45.33%), Query Frame = 2
Query:  119 SALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            SA   GACGYG++  S  G    A   +L+ +G  CG CFQ++C +   C       ++T  N                +  +  F ++  AFM ++N        K G++ V Y+RV C+ K   +  + E +     +L V V+  GG  ++  M V +   + W  MS N+GA +   S +   +L FR  +TS    + I+A N  PA W
Sbjct:   45 SATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIAN-------WKAGIIPVSYRRVACK-KIGGIRFKFEGNGY---WLLVYVMNVGGPGDIKTMAV-KGSRTGWINMSHNWGASYQAFSSLYGQSLSFR--LTSYTTRQTIYAYNAAPASW 244          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 62/213 (29.11%), Postives = 97/213 (45.54%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCSGKGTRVILTDLN--------HSNQTDFVISSRAFMALSNQGKGQ-DILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR-VPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    GACGYG+L  +  G + AA   +L+ DGA CG C+Q+ C   N   C   GT V +T  N         SN   +    R    ++     Q  + + G+V V ++RV C  K     VR   +     +  V +   GG   + ++ +     + W  MSRN+GA W  +  + N A+ F    T+   GK +  ++V P++W+
Sbjct:   35 SDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKA-GTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKG---GVRFTINGNS-YFELVLITNVGGPGSIKSVQIKGT-KTGWVTMSRNWGANWQANNYLNNQAISFSVTSTA---GKTLVFEDVAPSNWQ 238          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 58/208 (27.88%), Postives = 95/208 (45.67%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMA---LSNQGKGQDIL------KLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            AS    GACGYG+L     G   AA   +L+ +G  CG+CF++RC+N       G+ +++T  N     + + ++        L +    Q +       + G+V V Y+RVPC  +       +  +    +Y  + ++   G    V     +   + W  MSRN+G  W ++   NG AL F+ V TS  DG+ + + N  PA W
Sbjct:   39 ASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGS-IVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRG-----GIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFK-VTTS--DGRTVVSFNAAPAGW 237          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 61/219 (27.85%), Postives = 98/219 (44.75%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    GACGYG+L     G + AA   +L+ +G  CGACF+++C  +P  C      + +T  N                +  +  F ++   F+ ++         + G+V V ++RVPC  +     +R   +  +  +  V V    G   +V + V    +S W  MSRN+G  W ++ V  G +L FR V +S       W  N+ PA+WK
Sbjct:   42 SDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSFRRVPCRKRG---GIRFTINGFR-YFNLVLVTNVAGAGNIVRLGVKGTHTS-WMTMSRNWGQNWQSNSVLVGQSLSFR-VTSSDRRSSTSW--NIAPANWK 245          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 69/242 (28.51%), Postives = 99/242 (40.91%), Query Frame = 2
Query:   56 SSATACDRCVHQTKVAYF-SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP---------TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            SSA A  R        Y  + AS    GACGYG+      G   AA    ++ DG  CGACF++RC               +GK   V  TDL   NH+   D           F +S  AF+ ++         + G+V V Y+RV C  K   +   +   S   N + V  +   G    VA+       + W  M+RN+G  W +  + +G     F VT+  D + + + NV PA W
Sbjct:   22 SSAAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIAR-------FQSGIVPVSYRRVACRRKG-GMRFTINGHSYF-NLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQ-ALSFTVTTG-DRRSVVSYNVAPAGW 252          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 59/199 (29.65%), Postives = 89/199 (44.72%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDIL-KLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            AS    GACGYG+L     G   AA   +L+  G  CGACF++ C N      KG  +++T  N                LS     +  L K G++ V Y+RV C+ ++  +   +   S   N + V  +   G    V+M  ++   + W  MSRN+G  W ++   NG     FVVT+  D + + + NV P  W
Sbjct:   51 ASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPPGGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCK-RSGGIRFTINGHSYF-NLVLVTNVGGAGDVHSVSMKGSR---TKWQLMSRNWGQNWQSNSYLNGQ-SLSFVVTTS-DRRSVVSFNVAPPTW 242          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPA4_ORYSJ1.584e-1228.37Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI1.584e-1228.37Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP33_ORYSJ1.584e-1227.06Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ1.584e-1228.37Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH1.584e-1228.50Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP12_ORYSJ1.584e-1229.11Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ARATH1.584e-1227.88Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA6_ARATH2.069e-1227.85Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP21_ORYSJ3.529e-1228.51Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH4.609e-1229.65Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
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