FC925075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 61/215 (28.37%), Postives = 98/215 (45.58%), Query Frame = 2 Query: 116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKP-NYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712 AS GACGYG+L G + AA +L+ DGA CG+C+++RC N + C V T+ N+ +D F ++ AF+ ++ + G+V V ++RVPC K VR + N + V + G V++ ++ G W MSRN+G W ++ +G F VT+ DG+ + + NV W+ Sbjct: 37 ASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQ-------YRAGIVPVSFRRVPCVKKG---GVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTG---WQPMSRNWGQNWQSNAFLDGQ-SLSFQVTAS-DGRTVTSNNVAHPGWQ 236
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 61/215 (28.37%), Postives = 98/215 (45.58%), Query Frame = 2 Query: 116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP-TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKP-NYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712 AS GACGYG+L G + AA +L+ DGA CG+C+++RC N + C V T+ N+ +D F ++ AF+ ++ + G+V V ++RVPC K VR + N + V + G V++ ++ G W MSRN+G W ++ +G F VT+ DG+ + + NV W+ Sbjct: 37 ASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQ-------YRAGIVPVSFRRVPCVKKG---GVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTG---WQPMSRNWGQNWQSNAFLDGQ-SLSFQVTAS-DGRTVTSNNVAHPGWQ 236
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 59/218 (27.06%), Postives = 106/218 (48.62%), Query Frame = 2 Query: 110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCS-GKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPN-GALQFRFVVTSXYDGKWIWAKNVLPADW 709 S + GACGYG+L + G + AA +L+ DGA CGAC+ + C T C G + T+L N++ ++D F +S A+ +++ I + G+V V +KRVPC+ ++ +R S + +Y + ++ G + +VA + ++W MSRN+G W ++ N +L F+ + D + + N+ P++W Sbjct: 34 SDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIA-------IYQAGIVPVNFKRVPCQ---KSGGIRFTISGR--DYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLD---DAREVTVWNIAPSNW 236
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 61/215 (28.37%), Postives = 98/215 (45.58%), Query Frame = 2 Query: 110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLCSGKGTRVILTDLNH--------SNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMV-AMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712 + AS GACGYG L G AA +L+ DGA CG C+++ C + P C G V +T N S+ + R ++ + I + G++ V Y+RVPC K V + +Y + ++ T ++ +MDV S++W M RN+GA W + S + L FR + DG+ + +N++P+ WK Sbjct: 63 ADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCR-PGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKG-----GVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFR---VTNMDGQTLVFRNIVPSGWK 268
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 61/214 (28.50%), Postives = 97/214 (45.33%), Query Frame = 2 Query: 119 SALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709 SA GACGYG++ S G A +L+ +G CG CFQ++C + C ++T N + + F ++ AFM ++N K G++ V Y+RV C+ K + + E + +L V V+ GG ++ M V + + W MS N+GA + S + +L FR +TS + I+A N PA W Sbjct: 45 SATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIAN-------WKAGIIPVSYRRVACK-KIGGIRFKFEGNGY---WLLVYVMNVGGPGDIKTMAV-KGSRTGWINMSHNWGASYQAFSSLYGQSLSFR--LTSYTTRQTIYAYNAAPASW 244
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 62/213 (29.11%), Postives = 97/213 (45.54%), Query Frame = 2 Query: 110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCSGKGTRVILTDLN--------HSNQTDFVISSRAFMALSNQGKGQ-DILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSR-VPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712 S AS GACGYG+L + G + AA +L+ DGA CG C+Q+ C N C GT V +T N SN + R ++ Q + + G+V V ++RV C K VR + + V + GG + ++ + + W MSRN+GA W + + N A+ F T+ GK + ++V P++W+ Sbjct: 35 SDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKA-GTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKG---GVRFTINGNS-YFELVLITNVGGPGSIKSVQIKGT-KTGWVTMSRNWGANWQANNYLNNQAISFSVTSTA---GKTLVFEDVAPSNWQ 238
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 58/208 (27.88%), Postives = 95/208 (45.67%), Query Frame = 2 Query: 116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMA---LSNQGKGQDIL------KLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709 AS GACGYG+L G AA +L+ +G CG+CF++RC+N G+ +++T N + + ++ L + Q + + G+V V Y+RVPC + + + +Y + ++ G V + + W MSRN+G W ++ NG AL F+ V TS DG+ + + N PA W Sbjct: 39 ASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGS-IVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRG-----GIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFK-VTTS--DGRTVVSFNAAPAGW 237
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 61/219 (27.85%), Postives = 98/219 (44.75%), Query Frame = 2 Query: 110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712 S AS GACGYG+L G + AA +L+ +G CGACF+++C +P C + +T N + + F ++ F+ ++ + G+V V ++RVPC + +R + + + V V G +V + V +S W MSRN+G W ++ V G +L FR V +S W N+ PA+WK Sbjct: 42 SDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSFRRVPCRKRG---GIRFTINGFR-YFNLVLVTNVAGAGNIVRLGVKGTHTS-WMTMSRNWGQNWQSNSVLVGQSLSFR-VTSSDRRSSTSW--NIAPANWK 245
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12 Identity = 69/242 (28.51%), Postives = 99/242 (40.91%), Query Frame = 2 Query: 56 SSATACDRCVHQTKVAYF-SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNP---------TLCSGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709 SSA A R Y + AS GACGYG+ G AA ++ DG CGACF++RC +GK V TDL NH+ D F +S AF+ ++ + G+V V Y+RV C K + + S N + V + G VA+ + W M+RN+G W + + +G F VT+ D + + + NV PA W Sbjct: 22 SSAAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIAR-------FQSGIVPVSYRRVACRRKG-GMRFTINGHSYF-NLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQ-ALSFTVTTG-DRRSVVSYNVAPAGW 252
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12 Identity = 59/199 (29.65%), Postives = 89/199 (44.72%), Query Frame = 2 Query: 116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDIL-KLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709 AS GACGYG+L G AA +L+ G CGACF++ C N KG +++T N LS + L K G++ V Y+RV C+ ++ + + S N + V + G V+M ++ + W MSRN+G W ++ NG FVVT+ D + + + NV P W Sbjct: 51 ASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPPGGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCK-RSGGIRFTINGHSYF-NLVLVTNVGGAGDVHSVSMKGSR---TKWQLMSRNWGQNWQSNSYLNGQ-SLSFVVTTS-DRRSVVSFNVAPPTW 242 The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bpback to top |