FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 64/223 (28.70%), Postives = 97/223 (43.50%), Query Frame = 2
Query:   74 DRCVHQTKVAYFSQASALSS---GACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCK-NPTLCSGKGTRVILTDL-------NHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            D   +  + AY+       +   GACGYG L     G   AA   +L+  GA CGAC+++ C  NP  C     ++  TDL        +     F +S   F+ ++        +K  +V V Y+RVPC  K   +   V+ +   PN L +     GG  +++A+  A+   + W  MSR +G  W T+    G      V TS  DG      +V+PA W
Sbjct:   42 DTAWYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQ-------VKAKMVPVRYRRVPCA-KTGGVKFEVKGN---PNILTILPYNVGGAGDIIAVS-AKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTS--DGITKDFTDVMPASW 250          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 60/214 (28.04%), Postives = 92/214 (42.99%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLCSGKGTRVILTDLNH--------SNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    G CGYG L     G   AA   +L+ DGA CG C+++ C   + P  C   G  V +T  N         S+   +    R    ++    +   I   G++ V Y+RVPC  K   +   +         L   V   G    + +MD+    S++W  M RN+GA W + S +    L FR    +  DG+ +  KN++P+ WK
Sbjct:   45 ADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCK-PGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPC-IKKGGVRFTINGHDYFNLVLVTNVATTG---SIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFR---VTNMDGQTLVFKNIVPSGWK 250          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 56/209 (26.79%), Postives = 92/209 (44.02%), Query Frame = 2
Query:   86 HQTKVAYFSQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADW 709
            H T       +     GACGY        G   AA  P+L+ +GAGCGAC++++  +        T      +N      F ++  AF++++ +       KLGVV V Y++V C  +   +   +   +  P+Y  V V   GG  ++V + V       W  + R++G +W T + +   +L FR V+T  +     W   V P DW
Sbjct:   86 HATFYGGRDASGTTEGGACGYKDA--DGYGAMTAAVSPALFDNGAGCGACYELKGDSGKTVVVTATNQAPPPVNGMKGEHFDLTMPAFLSIAEE-------KLGVVPVSYRKVAC-VRQGGIKYTI---TGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFR-VMTGDHRKATSW--RVAPRDW 278          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLC-SGKGTRVILTDL---NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQ-GGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    GACGYG+L       + AA   +L+ DG  CG C+Q+ C   K P  C  GK   +  T+    N +  +D           F ++  AF+ ++         K G+V + YK+V C    ++  +R   + +  NY  + ++    G  E+  + +    S+ W  MSRN+GA + ++   NG +L F+  ++   DG    A NV+P++W+
Sbjct:   39 SDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAK-------YKAGIVPILYKKVGC---RRSGGMRFTINGR--NYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLS---DGSIKAALNVVPSNWR 244          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 60/213 (28.17%), Postives = 97/213 (45.54%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN--PTLCSGKGTRVILTDLNHSNQTDFVISS----------RAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADW 709
            S AS    GACGYG L  +  G   AA   +L+ DGA CG C+++ C +   +    KG  V++T  N     +F + +          + F       +   I + G+V V ++RV C YK   +  R+   + +  +  V +   GG   + ++ + +   + W  MSRN+GA W ++   +G AL F    T   DG      NV+P+ W
Sbjct:   37 SDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFC-PPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSC-YKKGGVRFRI---NGRDYFELVNIQNVGGAGSIKSVSI-KGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTT---DGATRVFLNVVPSSW 240          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 59/214 (27.57%), Postives = 93/214 (43.46%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLCSGKGTRVILTDLNH--------SNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDT-SRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    GACGY  L     G   AA   +L+ DGA CG C+++ C   + P  C   G  V +T  N         S+   +    R    ++    +   I + G++ V Y+RVPC  K   +   +         L   V   G    + +MD+    S++W  M RN+GA W + S +    L FR    +  DG+ +  +N++P+ WK
Sbjct:   61 ADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCK-PGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPC-VKKGGVRFTINGHDYFNLVLVTNVATTG---SIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFR---VTNMDGQTLVFRNIVPSGWK 266          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 60/214 (28.04%), Postives = 91/214 (42.52%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC---KNPTLCSGKGTRVILTDLNH--------SNQTDFVISSRAFMALSNQG-KGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    GACGYG+L     G   AA   +L+ DGA CG C+++ C   + P  C   G  V +T  N         S+   +    R    ++    +   +   G++ V Y+RVPC  K   L   +         L   V   G    + +M+V    +++W  M+RN+GA W +     G  L FR   T   D + +   NV+P  WK
Sbjct:   50 ADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCK-PGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPC-VKKGGLRFTINGHDYFQLVLVTNVAAAG---SIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNT---DDQTLVFTNVVPPGWK 255          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 62/219 (28.31%), Postives = 95/219 (43.38%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDL-----NHSNQTD-----------FVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    G+CGYG++  +  G +  A   +LY DGA CGAC+ + C  + T     GT V +T       N+S   D           F +S  A+ A++       +   G+V V Y R PC        +R   +    +Y  + ++     +  VA    +   + W  MSRN+G  W ++    G AL FR       DG  + A +V PA+W+
Sbjct:   38 SDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIA-------VYSSGIVPVRYARTPCRRVG---GIRFGIAGH--DYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFR---VQADDGGVVTAYDVAPANWQ 241          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 61/219 (27.85%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC-KNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    GACGYG+L     G + AA   +L+ +G  CGACF+++C  +P  C      +++T  N                +  +  F ++   F+ +        + + G+V V Y+RVPC  K   +   V    +  N + V  +   G    V++   +   ++W  MSRN+G  W ++ V  G +L FR V  S       W  NV PA W+
Sbjct:   47 SDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIG-------LYRAGIVPVSYRRVPCR-KIGGIRFTV-NGFRYFNLVLVTNVAGAGDINGVSV---KGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFR-VTASDRRSSTSW--NVAPATWQ 250          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 61/215 (28.37%), Postives = 92/215 (42.79%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKNPT---LCSGKGTRVILTDLNH--------SNQTDFVISSRAFMALSNQGKGQ-DILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMV-AMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            + AS    GACGYG+L     G   AA   +L+ DG  CG C+++ C   T    C   G  V +T  N         S+   +    R    ++     +  I + G++ V Y+RVPC  K       V  +    +Y  + +L   G    + AMDV    S +W  M+ N+GA W +     G  L FR  +T   DG+ +   NV+   W+
Sbjct:   45 ADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCK-PGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGG-----VRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTIT---DGQTLVFPNVVRPGWR 250          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXP21_ARATH4.609e-1228.70Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP14_ORYSJ4.609e-1228.04Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ7.861e-1226.79Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.341e-1128.05Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ARATH1.751e-1128.17Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP24_ORYSJ2.987e-1127.57Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ2.987e-1128.04Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ3.901e-1128.31Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH5.095e-1127.85Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP13_ORYSJ5.095e-1128.37Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
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