FC925075

Overview
NameFC925075
Unique NameFC925075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10250 contig Ccv1_Contig10250:24..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 63/223 (28.25%), Postives = 98/223 (43.95%), Query Frame = 2
Query:  116 ASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRC--KNPTLCSGKGTRVILTDLN----------------HSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSN-----WGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            AS    GACGYG+L     G   AA   +L+  G  CG+C+++RC   +   C   G  V +T  N                +  +  F ++  AF+ ++           G+V V ++RV C  K     VR   +     +  V V   GG  ++ ++ V   GS +     W  MSRN+G  W ++   +G AL FR  VT+  DG+ +   +V PA W+
Sbjct:   41 ASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHA-------AGIVPVSFRRVACARKG---GVRFTVNGH-AYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFR--VTAG-DGRSLTCADVAPAGWQ 249          
BLAST of FC925075 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 63/213 (29.58%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  110 SQASALSSGACGYGSLALSFNGGHLAAGVPSLYKDGAGCGACFQMRCKN---PTLCSGKGTRVILTDLN--------HSNQTDFVISSRAFMALSNQGKGQ-DILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSXYDGKWIWAKNVLPADWK 712
            S AS    GACGYG+L  S  G + AA   +L+ DGA CG C+Q+ C +   P  C  +G  V +T  N         SN   +    R    ++     Q  I K G+V V Y+RVPC  +       V  +    NY  + ++     +  +     +  +++   +SRN+GA W +     G     F VTS   G+ +  +N++PA WK
Sbjct:   43 SDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCL-QGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQG-----GVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQ-TLTFGVTST-GGQTLVFQNIVPAWWK 247          
The following BLAST results are available for this feature:
BLAST of FC925075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EXPA6_ORYSJ6.655e-1128.25Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP15_ORYSJ8.691e-1129.58Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YP15FM1 TF Citrus clementina cDNA clone KN0AAP1YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925075 ID=FC925075; Name=FC925075; organism=Citrus clementina; type=EST; length=716bp
CTATCTTTCTCATTAAACAATGGTTTTGTTTCTTTGCTTTCTCTTCTTTC
TCTTCTCTTCTGCTACTGCTTGTGATCGCTGTGTGCACCAAACCAAGGTT
GCTTATTTCTCCCAAGCCTCTGCACTTTCATCCGGGGCATGTGGATATGG
TTCATTAGCATTAAGCTTCAATGGTGGACACCTTGCTGCTGGTGTTCCTT
CCCTTTACAAAGATGGAGCTGGTTGTGGTGCATGCTTTCAAATGAGATGC
AAGAACCCAACTCTGTGTAGCGGCAAAGGAACCAGAGTGATTCTGACTGA
TCTCAATCACAGCAACCAAACAGATTTTGTTATCAGCAGCAGAGCTTTCA
TGGCCTTATCCAACCAGGGCAAGGGCCAAGACATTTTAAAACTTGGAGTT
GTCGATGTAGAATACAAAAGGGTTCCATGTGAATATAAAAACCAGAACTT
GGCTGTGCGTGTGGAAGAATCAAGTCAAAAACCAAATTATTTAGCAGTTA
AAGTGTTGTATCAGGGTGGTCAAACAGAAATGGTAGCAATGGATGTAGCT
CAGGTTGGTTCTTCAAACTGGGGTTACATGAGCAGAAATTATGGGGCAGT
TTGGGATACAAGTAGAGTGCCAAATGGGGCATTGCAGTTCAGATTTGTGG
TAACATCANGCTATGATGGCAAGTGGATTTGGGCAAAAAATGTTCTTCCA
GCTGATTGGAAACCTG
back to top