FC925079

Overview
NameFC925079
Unique NameFC925079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_MACPY (Calmodulin OS=Macrocystis pyrifera PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+ EAF ++D+D NG ISA EL  ++  LG K + +    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D+D +G I   EF ++  R       E EL EAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM3_ORYSJ (Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CAM3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF   + R       E EL+EAF ++D+D+NG ISA EL  V+  LG K + +    MI+  D DGDG +N++EF  +M
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYDEFVKVM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF   + +       E EL+EAF ++D+D+NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  +M
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG--AAGEAE--------------------LREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E++K+F  FD N DG+I+  EL    K+ G    ++EL   M+ +D + DG + + EF  + R+  G  AAG A                     +REAF+++DQ+ +G I+ +EL  VL+ LG+K   + D C  MI  VDADGDG V+F+EF+ MM
Sbjct:    5 ELRKVFKMFDKNGDGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEEFGLLYRSILGDDAAGRAPRTAAAAIGGEGGAPDDEDEGMREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMM 162          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 55/135 (40.74%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF ++  R       E EL EAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 55/135 (40.74%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF ++  R       E EL EAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 55/135 (40.74%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF ++  R       E EL EAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_CAPAN (Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF   + R       E EL+EAF ++D+D+NG ISA EL  V+  LG K + +    MI+  D DGDG +N++EF  +M
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVM 146          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 55/135 (40.74%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF ++  R       E EL EAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
The following BLAST results are available for this feature:
BLAST of FC925079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
CALM_MACPY8.178e-2140.00Calmodulin OS=Macrocystis pyrifera PE=2 SV=3[more]
CALM_HETTR8.178e-2140.74Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]
CALM3_ORYSJ8.178e-2139.26Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM1_ARATH8.178e-2139.26Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CML28_ORYSJ1.068e-2037.34Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CALM_PROMN1.068e-2040.74Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PFIPI1.068e-2040.74Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_KARMI1.068e-2040.74Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_CAPAN1.068e-2039.26Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3[more]
CALM_ALEFU1.068e-2040.74Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP19FM1 TF Citrus clementina cDNA clone KN0AAP1YP19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925079 ID=FC925079; Name=FC925079; organism=Citrus clementina; type=EST; length=669bp
ACAGAACAAAAGAAAAAGAAAAGCAATGGCAGCAACAACGGAGGCAGATT
CGAATAGGAAACAGCTAATAGTGAGCCGGGAGGAGATGCAGAAGATCTTC
AACCAGTTCGACGCGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGC
GACCGTTTTGAAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCC
GCGTCATGGAGGATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCG
GAGTTCGAAACGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGA
GCTCCGCGAGGCGTTTGATCTCTACGATCAGGACAAGAACGGCTTGATTT
CGGCGGAGGAGTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCG
GTTGATGGATGTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGG
CAATGTGAATTTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAAC
CTGGTCCTGCGCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCC
GTACCGATATTAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGC
CTACTTGTGTCTACTACTTTTAATGTTAATAAACTCTGATGCATTTTTCA
TGGTTTAAAAAAAAAAAAA
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