FC925079

Overview
NameFC925079
Unique NameFC925079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 2
Query:   86 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 475
            +Q +F + D NKDG I + +LA  LK +G    E EL ++++  D D+DG +   EF    R       E +LR  F   D+  +G I A+E+   L  LG+  S      ++K +D +G   +++ E+R
Sbjct:   61 LQILFQELDVNKDGAICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFDEFVHYLRDH-----EKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWR 185          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  119 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  119 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  119 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 2
Query:   86 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 475
            +Q +F + D NKDG I + +LA  LK +G    E EL ++++  D D+DG +   EF    R       E +LR  F   D+  +G I A+E+   L  LG+  S      ++K +D +G   +++ E+R
Sbjct:   60 LQILFQELDVNKDGGICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFEEFVHYLRDH-----EKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWR 184          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CDPKM_ARATH (Calcium-dependent protein kinase 22 OS=Arabidopsis thaliana GN=CPK22 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 47/167 (28.14%), Postives = 78/167 (46.71%), Query Frame = 2
Query:    5 NKRKRKAMAATTEADSNRKQLIVSREE---MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 496
            NK K+ A+    E         +S EE   ++ +F   D +K G I+  EL   L   GS   E E+ ++ME  D D +G I   EF +          +  L +AF  +D+D +G I+ EE+ + +   G+    +    +I   D + DG +++EEF +MM   +
Sbjct:  329 NKLKKLALKVIAEG--------LSEEEIKGLKTMFENMDMDKSGSITYEELKMGLNRHGSKLSETEVKQLMEAADVDGNGTIDYIEFISATMHRHRLERDEHLYKAFQYFDKDGSGHITKEEVEIAMKEHGMGDEAN-AKDLISEFDKNNDGKIDYEEFCTMMRNGI 486          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  293 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 490
            E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   14 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTS 79          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: CML27_ORYSJ (Probable calcium-binding protein CML27 OS=Oryza sativa subsp. japonica GN=CML27 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 2
Query:   86 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA----------------GEAELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            ++++F+ FD N DG+I+L E+A+ L ++G       L   +          +   +FE + R    A                  E +++EAF ++D+D +G ISA EL  VL +LG+    ++     MI  VD D DG V+F EF+ MM
Sbjct:   32 LRRVFDLFDRNGDGEITLDEMASALDALGLGADRAGLEATVGGYIPAGAAGLRFGDFEALHRALGDALFGPVEEEEPGKQGEDDDEGDMKEAFRVFDEDGDGFISAAELQAVLKKLGLPEARNLATVQEMICNVDRDCDGRVDFGEFKCMM 182          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEA---ELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 484
            E +  F+ FD +  G IS  EL T++K +G S   EEL ++++++D D  G I   EF E + R    +  E    ELR AF + D++ +G I  +E   + +   G   + D  +  +   D + DG  ++EE++ ++
Sbjct:   18 EFKMAFDMFDEDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
BLAST of FC925079 vs. ExPASy Swiss-Prot
Match: POLC3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   83 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG 283
            E ++IF +FDAN DGKIS +EL   LK++G S   EE+ R+M ++DTD DGFIS  EF    R + G
Sbjct:   10 EHERIFKRFDANGDGKISSSELGETLKTLG-SVTPEEIQRMMAEIDTDGDGFISFEEFTVFARANRG 75          
The following BLAST results are available for this feature:
BLAST of FC925079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
SCMC2_XENLA3.444e-1131.54Calcium-binding mitochondrial carrier protein SCaM... [more]
TNNC1_RABIT4.498e-1128.57Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_MOUSE4.498e-1128.57Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_HUMAN4.498e-1128.57Troponin C, slow skeletal and cardiac muscles OS=H... [more]
SCMC2_XENTR4.498e-1131.54Calcium-binding mitochondrial carrier protein SCaM... [more]
CDPKM_ARATH4.498e-1128.14Calcium-dependent protein kinase 22 OS=Arabidopsis... [more]
CALM_STRPU4.498e-1151.52Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CML27_ORYSJ5.874e-1130.46Probable calcium-binding protein CML27 OS=Oryza sa... [more]
TNNC_BRALA7.672e-1129.50Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]
POLC3_OLEEU7.672e-1150.75Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP19FM1 TF Citrus clementina cDNA clone KN0AAP1YP19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925079 ID=FC925079; Name=FC925079; organism=Citrus clementina; type=EST; length=669bp
ACAGAACAAAAGAAAAAGAAAAGCAATGGCAGCAACAACGGAGGCAGATT
CGAATAGGAAACAGCTAATAGTGAGCCGGGAGGAGATGCAGAAGATCTTC
AACCAGTTCGACGCGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGC
GACCGTTTTGAAATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCC
GCGTCATGGAGGATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCG
GAGTTCGAAACGATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGA
GCTCCGCGAGGCGTTTGATCTCTACGATCAGGACAAGAACGGCTTGATTT
CGGCGGAGGAGTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCG
GTTGATGGATGTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGG
CAATGTGAATTTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAAC
CTGGTCCTGCGCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCC
GTACCGATATTAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGC
CTACTTGTGTCTACTACTTTTAATGTTAATAAACTCTGATGCATTTTTCA
TGGTTTAAAAAAAAAAAAA
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