FC925082

Overview
NameFC925082
Unique NameFC925082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:707..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.035e-20
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDDYQKSR---FVNRVVASMF-NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDELHTLD 655
            AE SK AANAFLA +IS +N M+ LC  TG ++  V   +G+D RIG  F+ A  G+GGSCF KD+  L+   E  G      Y  Q+++  + + +R    +   +  +F      + +A+ G AFK  T D RE P++ + + LL    R+  +DP        R          +P            ++++    Y A + A  + ++TEW +    D
Sbjct:  206 AEFSKYAANAFLATKISFMNEMAGLCALTGVDIEDVRRGMGSDKRIGTHFIYAGCGYGGSCFPKDVRALIRSAEQQG------YDSQILRAVEARNARQKELLFETLGELFQGRWQGRTVALWGLAFKPGTDDLREAPSLVLLEALLRHGVRVRAHDPVANAGVAAR----------YP------EAVACARLTLHDSPYAAVEGADALVLVTEWKQFRQPD 405          
BLAST of FC925082 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 38/93 (40.86%), Postives = 62/93 (66.67%), Query Frame = 2
Query:    2 AELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIDD 280
            AEL K A+NAFLA +IS +N ++ L +   A++  +++A+G D RIG KFLNA +G+GGSCF  D   +++I    GL  +   +K++ +++D
Sbjct:  201 AELIKYASNAFLATKISFINELAKLSDKVKADIKTISYAMGLDPRIGNKFLNAGIGYGGSCFHPD--EVLFIDRGRGLECIT--FKELFELED 289          
The following BLAST results are available for this feature:
BLAST of FC925082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UDG_PSEAE3.035e-2029.73UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
Y1054_METJA3.593e-1340.86Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YP24FM1 TF Citrus clementina cDNA clone KN0AAP1YP24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925082 ID=FC925082; Name=FC925082; organism=Citrus clementina; type=EST; length=656bp
TGCAGAGCTTTCTAAGCTTGCAGCCAATGCTTTCTTGGCACAGAGGATCT
CATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTGGAGCTAATGTC
AGTCAGGTGGCATTTGCTGTTGGTACAGACTCTAGGATTGGGCCCAAATT
CTTGAATGCTAGTGTTGGGTTCGGTGGCTCCTGCTTCCAGAAGGATATTT
TGAATCTGGTTTACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAG
TACTGGAAACAAGTCATTAAGATCGATGATTACCAGAAAAGCCGTTTTGT
GAACCGCGTAGTTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTG
CCGTTCTGGGATTTGCCTTCAAGAAGGATACCGGTGACACCAGAGAGACC
CCAGCCATTGATGTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAG
CATATACGACCCACAGGTCACCGAGGACCAGATCCAAAGGGACCTTACAA
TGAACAAGTTTGACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCC
ACCACGGTGAAGCAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAA
AGATGCCCATGGTGTCTGCATCTTGACCGAGTGGGATGAGTTACATACTC
TTGACT
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