FC925090

Overview
NameFC925090
Unique NameFC925090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15480 contig Ccv1_Contig15480:216..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_CLOPS (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens (strain SM101 / Type A) GN=pstB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.252e-33
Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTEN---EVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST LR LNR+ +        G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G   KK+ +    E  +              +   +S GQ QR+ +AR +A  PE++L+DEPTSALDPIST  +E+++ KL+ K+  TIV+V+H+++Q  RI+D     +NGE+VE
Sbjct:   40 GPSGCGKSTFLRTLNRMNDLIPIVRIEGEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIKDKKVLDKIVEESLRDAAIWDEVKNRLKSSALGLSGGQQQRICIARAIAMNPEIILMDEPTSALDPISTLKVEELIRKLEDKY--TIVIVTHNMQQAARISDKTAFFLNGELVE 228          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_CLOPE (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens GN=pstB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.252e-33
Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTEN---EVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST LR LNR+ +        G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G   KK+ +    E  +              +   +S GQ QR+ +AR +A  PE++L+DEPTSALDPIST  +E+++ KL+ K+  TIV+V+H+++Q  RI+D     +NGE+VE
Sbjct:   40 GPSGCGKSTFLRTLNRMNDLIPIVRIEGEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIKDKKVLDKIVEESLRDAAIWDEVKNRLKSSALGLSGGQQQRICIARAIAMNPEIILMDEPTSALDPISTLKVEELIRKLEDKY--TIVIVTHNMQQAARISDKTAFFLNGELVE 228          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_CLOP1 (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pstB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.252e-33
Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTEN---EVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST LR LNR+ +        G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G   KK+ +    E  +              +   +S GQ QR+ +AR +A  PE++L+DEPTSALDPIST  +E+++ KL+ K+  TIV+V+H+++Q  RI+D     +NGE+VE
Sbjct:   40 GPSGCGKSTFLRTLNRMNDLIPIVRIEGEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIKDKKVLDKIVEESLRDAAIWDEVKNRLKSSALGLSGGQQQRICIARAIAMNPEIILMDEPTSALDPISTLKVEELIRKLEDKY--TIVIVTHNMQQAARISDKTAFFLNGELVE 228          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_BORGA (Phosphate import ATP-binding protein pstB OS=Borrelia garinii GN=pstB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.599e-32
Identity = 85/199 (42.71%), Postives = 118/199 (59.30%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 577
            GPSG GKST LR LNR+ +        G V  +G++I   + D+L LRRK+GM+FQ P  F  ++ DNI YGP++ G    KKL E   +  K                  +S GQ QR+ +ARTLA EP V+L+DEPTSALDPIST  IE++++ LK+ +  TI++V+H+++Q  RI+D     +NG I E    D L
Sbjct:   46 GPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWDEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDKTAFFLNGCIEEESPTDEL 242          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_BORBU (Phosphate import ATP-binding protein pstB OS=Borrelia burgdorferi GN=pstB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.599e-32
Identity = 85/199 (42.71%), Postives = 118/199 (59.30%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 577
            GPSG GKST LR LNR+ +        G V  +G++I   + D+L LRRK+GM+FQ P  F  ++ DNI YGP++ G    KKL E   +  K                  +S GQ QR+ +ARTLA EP V+L+DEPTSALDPIST  IE++++ LK+ +  TI++V+H+++Q  RI+D     +NG I E    D L
Sbjct:   46 GPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLHTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 242          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_CLOD6 (Phosphate import ATP-binding protein pstB OS=Clostridium difficile (strain 630) GN=pstB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32
Identity = 82/191 (42.93%), Postives = 116/191 (60.73%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ---LRGKKLTEN---EVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST +R LNR+ +        G + +DG DI T  DV++LR KVGM+FQ P  F  ++ DN+ YGP+   LR KK  +    E  K              +   +S GQ QR+ +AR +A  PEV+L+DEPTSALDPIST  +E+++  LKK +  TIV+V+H+++Q  RI+D     +NGE++E
Sbjct:   41 GPSGCGKSTFIRTLNRMNDLIEDVTIKGNISVDGEDIYTSDDVINLRTKVGMVFQKPNPFPMSIYDNVAYGPRTHGLRDKKQLDKIVEESLKGAAIWDEVKDRLKSSALGLSGGQQQRICIARAIAMRPEVILMDEPTSALDPISTLKVEELIEDLKKDY--TIVIVTHNMQQAARISDETAFFLNGEVIE 229          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_BORAP (Phosphate import ATP-binding protein pstB OS=Borrelia afzelii (strain PKo) GN=pstB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32
Identity = 85/199 (42.71%), Postives = 118/199 (59.30%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 577
            GPSG GKST LR LNR+ +        G V  +G++I   + D+L LRRK+GM+FQ P  F  ++ DNI YGP++ G    KKL E   +  K                  +S GQ QR+ +ARTLA EP V+L+DEPTSALDPIST  IE++++ LK+ +  TI++V+H+++Q  RI+D     +NG I E    D L
Sbjct:   46 GPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWDEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCIEEESPTDEL 242          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_MOOTA (Phosphate import ATP-binding protein pstB OS=Moorella thermoacetica (strain ATCC 39073) GN=pstB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 83/200 (41.50%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG-------KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 577
            GPSG GKST LR LNRL +       SG + LDG++I   ++DV++LR++VGM+FQ P  F  ++ DNI YGP++ G         + E  + K              +   +S GQ QR+ +AR LA EPEV+L+DEP+SALDPIST  IE+++  LK+K+  TIV+V+H+++Q  R++D     +NGE+VE  + +++
Sbjct:   38 GPSGCGKSTFLRTLNRLNDLIDGVRISGEILLDGQNIYAPEVDVVALRKRVGMVFQRPNPFPMSIYDNIAYGPRIHGITSRRELDGIVERSL-KAAALWDEVAGRLRHSALGLSGGQQQRLCIARLLAVEPEVVLMDEPSSALDPISTLKIEELIHNLKEKY--TIVIVTHNMQQAARVSDYTAFFLNGEMVEYDETEII 234          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_METTH (Phosphate import ATP-binding protein pstB OS=Methanobacterium thermoautotrophicum GN=pstB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTENEV---YKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST +R LNR+ +  SG      V+LDG+DI   D+DV+ LR+KVGM+FQ P  F  ++ +N+ YG ++ G   +   E  V    +             K+   +S GQ QR+ +ART+A EPEV+L+DEP SALDPIST  IED++ KLK  +  TI++V+H+++Q  R++      ++GEIVE
Sbjct:   39 GPSGCGKSTFIRTLNRMNDVISGFRHEGHVYLDGKDIYDPDMDVVELRKKVGMVFQKPNPFPKSIFENVAYGLRVHGYDDRDFIEERVEESLRAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTTKIEDLIHKLKNDY--TIIIVTHNMQQATRVSKYTAFFLHGEIVE 228          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_MYCMO (Phosphate import ATP-binding protein pstB OS=Mycoplasma mobile GN=pstB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.786e-31
Identity = 84/196 (42.86%), Postives = 115/196 (58.67%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG-------KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 565
            GPSG GKST LR LNR+ +        G +F +G++I    L V  LR +VGM+FQ P  F  ++ DNI YGP+  G        K+ EN + K               G  +S GQ QR+ +AR +A EP VLL+DEPTSALDPI+T  +E++++KLK ++  +IV+V+HS+ Q QRI+D       GEIVE  K
Sbjct:   67 GPSGCGKSTFLRELNRMNDTIEGVLTDGNIFFEGKNIKSKKLPVTFLRTRVGMVFQKPTPFPISIYDNIAYGPRSNGIHNKKVLDKIVENAL-KSAALWEEVKNNLKDLGTSLSGGQQQRLCIARAIAIEPHVLLMDEPTSALDPIATAKVEELILKLKDRY--SIVIVTHSMSQAQRISDDTLFFYAGEIVEANK 259          
The following BLAST results are available for this feature:
BLAST of FC925090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PSTB_CLOPS7.252e-3342.93Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOPE7.252e-3342.93Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOP17.252e-3342.93Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_BORGA3.599e-3242.71Phosphate import ATP-binding protein pstB OS=Borre... [more]
PSTB_BORBU3.599e-3242.71Phosphate import ATP-binding protein pstB OS=Borre... [more]
PSTB_CLOD64.701e-3242.93Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_BORAP4.701e-3242.71Phosphate import ATP-binding protein pstB OS=Borre... [more]
PSTB_MOOTA6.139e-3241.50Phosphate import ATP-binding protein pstB OS=Moore... [more]
PSTB_METTH6.139e-3242.71Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_MYCMO1.786e-3142.86Phosphate import ATP-binding protein pstB OS=Mycop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YB02FM1 TF Citrus clementina cDNA clone KN0AAP3YB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925090 ID=FC925090; Name=FC925090; organism=Citrus clementina; type=EST; length=786bp
GGTGATCATCGTTATCATTGGGCCCAGTGGAAGCGGCAAATCAACCCTGT
TGAGGGCGCTGAACCGTCTGTGGGAGCCACCCTCTGGTACGGTGTTCTTG
GACGGCCGCGATATTACTGATCTCGACGTTCTCTCTCTTCGTCGTAAAGT
TGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAGGCACAGTTGCTGATA
ATATTCGATATGGACCACAATTGAGGGGAAAGAAATTAACCGAGAATGAG
GTTTACAAGTTGCTCTCACTTGCAGACCTCGACTCCTCTTTCCTTAGCAA
AACGGGTGCCGAAATATCAGTTGGCCAAGCTCAAAGAGTTGCTCTAGCTC
GAACACTGGCCAACGAACCAGAGGTTCTGCTTCTGGATGAGCCAACGAGT
GCATTGGATCCAATATCGACACAGAACATAGAGGATGTGTTAGTGAAGCT
GAAGAAGAAACATGGAATGACAATTGTCATGGTCTCTCACAGCATCAAAC
AAATCCAAAGGATCGCCGACGTCGTTTGCCTGCTAGTGAATGGTGAGATT
GTGGAAGTTCTGAAACCTGATCTGCTCTCGGAAGCCAAGCATCCCATGGC
ACTAAGGTTTCTTCAACTCAGCGGTTAGGGAGACATGTCACTTGTTCAAT
TTTATTCCACCATGTCAACTGTGCTGTCCCATTTGTACTTGATTATGAAA
ATAAACTGAATTATGTATTACTATATGAGCAAGTATTGTACTACATATAC
TTCTTGTACTTCCTAAAAAAAAAAAAAAAAAAAAAA
back to top