FC925090

Overview
NameFC925090
Unique NameFC925090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15480 contig Ccv1_Contig15480:216..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_METMA (Phosphate import ATP-binding protein pstB OS=Methanosarcina mazei GN=pstB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 81/191 (42.41%), Postives = 116/191 (60.73%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--KKLTENEV---YKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST +R LNR+ +        G V ++  DI  TD+DV+ LR++VGM+FQ P  F  ++ DN+ YGP++ G  KK  +  V    +                  +S GQ QR+ +ARTLA +P ++L DEPTSALDPIST  IED+++ LKK +  TIV+V+H+++Q  RI+D     + GE+VE
Sbjct:   45 GPSGCGKSTFIRCLNRMNDLVKNCRIEGKVLIENEDIYGTDVDVVELRKQVGMVFQKPNPFPMSIYDNVAYGPRIHGVNKKDIDGVVRNALRSAALFEETSDRLKSPALSLSGGQQQRLCIARTLAVKPRIILFDEPTSALDPISTARIEDLIMNLKKDY--TIVIVTHNMQQAARISDYTGFFLMGELVE 233          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_DEHSC (Phosphate import ATP-binding protein pstB OS=Dehalococcoides sp. (strain CBDB1) GN=pstB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 81/192 (42.19%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLRALNR+ +  SG      V LD  +I   +LDV++LR++VGM+FQ P  F  ++ DN+ +GP++ G     +L E   +  +             K+G  +S GQ QR+ +AR LA EPEV+L+DEP SALDP+ST  IE+++ +LK+ +  TI +V+H+++Q  R +D    L+ G++VE
Sbjct:   37 GPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTVQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNY--TIAIVTHNMQQAARASDWTGFLLTGDLVE 226          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_DEHE1 (Phosphate import ATP-binding protein pstB OS=Dehalococcoides ethenogenes (strain 195) GN=pstB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.788e-31
Identity = 78/193 (40.41%), Postives = 122/193 (63.21%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG-------KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLRALNR+ +  SG      V LD  ++   +LDV++LR++VGM+FQ P  F  ++ DN+ +GP++ G        ++ E  +++             K+G  +S GQ QR+ +AR LA EPEV+L+DEP SALDP+ST  IE+++ +LK+ +  TI +V+H+++Q  R +D    L+ G+++E
Sbjct:   37 GPSGCGKSTLLRALNRMNDLVSGARLEGEVLLDNENVYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGITAQSRLNEIVEKSLHQAALWDEVKDNLH-KSGMALSGGQQQRLCIARVLAVEPEVILMDEPCSALDPVSTMRIEELMQELKQNY--TIAIVTHNMQQAARASDWTGFLLTGDLIE 226          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB2_PHOPR (Phosphate import ATP-binding protein pstB 2 OS=Photobacterium profundum GN=pstB2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 82/191 (42.93%), Postives = 119/191 (62.30%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT-DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXXKTGAE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLR LNR+ +        G + +DG D+  ++DV  LR KVGM+FQ P  F  ++ +N+ YG + +G   KK+ +  V +             +  +    +S GQ QR+ +ART+A EPEV+L+DEPTSALDPI+T+ IED++  LKK    TIV+V+HS++Q +RI+D     + GE+VE
Sbjct:   41 GPSGCGKSTLLRCLNRMNDLIEGVKIDGLLSMDGEDVYGNIDVAQLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDGVVEQSLRGAALWDEVKDRLKSHAFSLSGGQQQRLCIARTIAMEPEVILMDEPTSALDPIATKKIEDLMESLKK--DFTIVIVTHSMQQARRISDRTAFFLMGELVE 229          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB1_SYMTH (Phosphate import ATP-binding protein pstB 1 OS=Symbiobacterium thermophilum GN=pstB1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 78/192 (40.62%), Postives = 122/192 (63.54%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--KKLTENEVY----KXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKS+ LR LNR+ +        GT+ LDG DI    +DV++LRR+VGM+FQ P  F  ++ DN+ YGP++ G  +K   +E+     +             ++   +S GQ QR+ +AR+LA +PEVLL+DEP SALDPIST  IE+++ +L+ ++  +IV+V+H+++Q  RI+D     ++GE++E
Sbjct:   28 GPSGCGKSSFLRCLNRMNDLIPGARVEGTITLDGADIYAPGVDVVALRRRVGMVFQRPNPFPMSIYDNVAYGPRIHGERRKAVLDEIVEQSLRGAALWDEVKDRLHRSALGLSGGQQQRLCIARSLAVKPEVLLMDEPASALDPISTAKIEELIRELRAQY--SIVIVTHNMQQAARISDYTAFFLSGELIE 217          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: METN_STAHJ (Methionine import ATP-binding protein metN OS=Staphylococcus haemolyticus (strain JCSC1435) GN=metN PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 82/205 (40.00%), Postives = 120/205 (58.54%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK---VGMLFQ-IPALFEGTVADNIRYGPQLRGKKLTE-NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSEAKHPMALRFLQ 616
            G SG+GKSTL+R  N L EP SG + +DG +I  L    LRRK   V M+FQ    L+  TV  NI +  ++ G   T+ NE  K                +E+S GQ QRV +AR LANEP+VLL DE TSALDP +T  I D+L+K+K++  +TIV+++H +  I+R+ D V ++ +G ++E  K   +    +H +  RF++
Sbjct:   38 GFSGAGKSTLIRMFNNLEEPTSGDIIIDGDNINKLSKAELRRKRQKVSMVFQHFNLLWSRTVLRNITFPLEIAGYSKTKANERAKELIDLVGLNGRENAYPSELSGGQKQRVGIARALANEPDVLLCDEATSALDPQTTDEILDLLLKIKERENLTIVIITHEMHVIRRVCDEVAVMESGRVIEQGKVTQVFENPQHEVTRRFVK 242          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB2_LACAC (Phosphate import ATP-binding protein pstB 2 OS=Lactobacillus acidophilus GN=pstB2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.512e-30
Identity = 79/192 (41.15%), Postives = 114/192 (59.38%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST LR LNR+ +       +G +  +G+DI  + +D+++LR+ VGM+FQ P  F  +V DN+ YG ++ G K  E       E  K             +     S GQ QR+ +AR LA  P+V+LLDEPTSALDPIS+  IE+ L+ L  KH  T +MV+H+++Q  R++D    L+NG++VE
Sbjct:   37 GPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQDIYGSKMDLVALRKNVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLNRNAQAFSGGQQQRICIARALAIRPKVVLLDEPTSALDPISSSEIEETLMDL--KHQYTFIMVTHNLQQAGRVSDQTAFLMNGDLVE 226          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_DESVH (Phosphate import ATP-binding protein pstB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=pstB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.975e-30
Identity = 82/192 (42.71%), Postives = 117/192 (60.94%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE--PPS---GTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST LR LNR+ +  P S   G + LDG +I D  +DV+ LRR+VGM+FQ P  F  TV +N+ YG ++ G K  E       +  +              +   +S GQ QR+ +AR LA EPEVLL+DEP SALDPI+TQ IE+++  LK+++  TI++V+HS++Q  R++DV      G ++E
Sbjct:   41 GPSGCGKSTFLRCLNRMNDLIPISRVEGVIALDGENIYDPKVDVVELRRRVGMVFQKPNPFPKTVFENVAYGLRVNGVKDREYLEEKVEQSLRHAALWDEVKDRLQDSALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHILKQQY--TIIIVTHSMQQAARVSDVTAFFYMGRLIE 230          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB2_VIBF1 (Phosphate import ATP-binding protein pstB 2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=pstB2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.975e-30
Identity = 81/192 (42.19%), Postives = 116/192 (60.42%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLR +NR+ +        G++ L G DI   D D+ SLRR+VGM+FQ P  F  ++ +N+ YG +L+G K          E  K             +    +S GQ QR+ +AR +A EPEVLLLDEPTSALDPIST  IE+++ +LK K+  T+V+V+H+++Q  R++D    +  G++VE
Sbjct:   58 GPSGCGKSTLLRCINRMNDLVDNCKIKGSIKLFGDDIYHPDTDIPSLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIKEARVLDEAVEEALKAAALWDEVKHRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELIYELKSKY--TVVIVTHNMQQAARVSDYTAFINQGKLVE 247          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB2_VIBPA (Phosphate import ATP-binding protein pstB 2 OS=Vibrio parahaemolyticus GN=pstB2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.579e-30
Identity = 81/191 (42.41%), Postives = 120/191 (62.83%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT-DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXXKTGAE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLR LNR+ +       +G + +DG DI  ++DV  LR KVGM+FQ P  F  ++ +N+ YG + +G   KK  +  V +             +  +    +S GQ QR+ +ART+A EP+V+L+DEPTSALDPI+T  IE+++ +LKK +  TIV+V+HS++Q +RI+D     + GE+VE
Sbjct:   36 GPSGCGKSTLLRCLNRMNDLIEGVKITGKLAMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKTIDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY--TIVIVTHSMQQARRISDRTAFFLMGELVE 224          
The following BLAST results are available for this feature:
BLAST of FC925090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PSTB_METMA5.197e-3142.41Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_DEHSC5.197e-3142.19Phosphate import ATP-binding protein pstB OS=Dehal... [more]
PSTB_DEHE16.788e-3140.41Phosphate import ATP-binding protein pstB OS=Dehal... [more]
PSTB2_PHOPR1.158e-3042.93Phosphate import ATP-binding protein pstB 2 OS=Pho... [more]
PSTB1_SYMTH1.158e-3040.63Phosphate import ATP-binding protein pstB 1 OS=Sym... [more]
METN_STAHJ1.158e-3040.00Methionine import ATP-binding protein metN OS=Stap... [more]
PSTB2_LACAC1.512e-3041.15Phosphate import ATP-binding protein pstB 2 OS=Lac... [more]
PSTB_DESVH1.975e-3042.71Phosphate import ATP-binding protein pstB OS=Desul... [more]
PSTB2_VIBF11.975e-3042.19Phosphate import ATP-binding protein pstB 2 OS=Vib... [more]
PSTB2_VIBPA2.579e-3042.41Phosphate import ATP-binding protein pstB 2 OS=Vib... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB02FM1 TF Citrus clementina cDNA clone KN0AAP3YB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925090 ID=FC925090; Name=FC925090; organism=Citrus clementina; type=EST; length=786bp
GGTGATCATCGTTATCATTGGGCCCAGTGGAAGCGGCAAATCAACCCTGT
TGAGGGCGCTGAACCGTCTGTGGGAGCCACCCTCTGGTACGGTGTTCTTG
GACGGCCGCGATATTACTGATCTCGACGTTCTCTCTCTTCGTCGTAAAGT
TGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAGGCACAGTTGCTGATA
ATATTCGATATGGACCACAATTGAGGGGAAAGAAATTAACCGAGAATGAG
GTTTACAAGTTGCTCTCACTTGCAGACCTCGACTCCTCTTTCCTTAGCAA
AACGGGTGCCGAAATATCAGTTGGCCAAGCTCAAAGAGTTGCTCTAGCTC
GAACACTGGCCAACGAACCAGAGGTTCTGCTTCTGGATGAGCCAACGAGT
GCATTGGATCCAATATCGACACAGAACATAGAGGATGTGTTAGTGAAGCT
GAAGAAGAAACATGGAATGACAATTGTCATGGTCTCTCACAGCATCAAAC
AAATCCAAAGGATCGCCGACGTCGTTTGCCTGCTAGTGAATGGTGAGATT
GTGGAAGTTCTGAAACCTGATCTGCTCTCGGAAGCCAAGCATCCCATGGC
ACTAAGGTTTCTTCAACTCAGCGGTTAGGGAGACATGTCACTTGTTCAAT
TTTATTCCACCATGTCAACTGTGCTGTCCCATTTGTACTTGATTATGAAA
ATAAACTGAATTATGTATTACTATATGAGCAAGTATTGTACTACATATAC
TTCTTGTACTTCCTAAAAAAAAAAAAAAAAAAAAAA
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