FC925090

Overview
NameFC925090
Unique NameFC925090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15480 contig Ccv1_Contig15480:216..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: CBIO1_CLOPE (Cobalt import ATP-binding protein cbiO 1 OS=Clostridium perfringens GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.184e-29
Identity = 78/187 (41.71%), Postives = 116/187 (62.03%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL--SLRRKVGMLFQIPA--LFEGTVADNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXXKTGAE-----ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 553
            G +GSGKST ++ LN L  P SG + +DG +I D  V    +R+KVG++FQ P   LFE T+  +I YGP+  G  ++E E+ K             +T  +     +S GQ +RVA+A  +A EP+VL+LDEPT+ LDP   ++I   +  L K++GMTI+MVSHS++ + +IAD V ++ +GEIV
Sbjct:   40 GHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIADKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIEYGPRNLG--ISEEEISKRVKKSMEMVGLDYETYKDKSPFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMTIIMVSHSMEDVAKIADRVIVMNSGEIV 224          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_SHEDO (Phosphate import ATP-binding protein pstB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=pstB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 80/192 (41.67%), Postives = 116/192 (60.42%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLR +NR+ +        G + L G++I D  +DV +LRR VGM+FQ P  F  ++ +N+ YG +L+G    + L E      +                  +S GQ QR+ +AR +A EPEVLLLDEPTSALDPIST  IE+++ +LK K+  T+V+V+H+++Q  R++D    +  GE+VE
Sbjct:   58 GPSGCGKSTLLRCINRMNDLVDSCKIKGEILLHGQNIYDKKVDVAALRRNVGMVFQRPNPFPKSIYENVVYGLRLQGLNNRRDLDEAAERSLRGAAIWDEVKDRLHDNAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELITELKDKY--TVVIVTHNMQQAARVSDQTAFMYMGELVE 247          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_PSYCK (Phosphate import ATP-binding protein pstB OS=Psychrobacter cryohalolentis (strain K5) GN=pstB PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 80/198 (40.40%), Postives = 120/198 (60.61%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT--DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEV-------YKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 571
            GPSG GKSTLLR  NR+++        G + LDG++I   D+DV  LR +VGM+FQ P  F  ++ DN+ +G +L  +KL++ E+        K              +G  +S GQ QR+ +AR +A +PEVLLLDEPTSALDPIST  IE+++  LK  +  TI +V+H+++Q  R++D    +  G++VE+ + D
Sbjct:   38 GPSGCGKSTLLRTFNRMYDLYPGMRAEGNINLDGKNILGKDIDVNLLRAQVGMVFQKPTPFPMSIYDNVAFGVRLY-EKLSKAEMDNRVEWALKKAALWLEVKDKLRASGLSLSGGQQQRLCIARGVATKPEVLLLDEPTSALDPISTGAIEELITDLKNDY--TIAIVTHNMQQAARVSDYTAYMYLGDMVEMGETD 232          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_PSYA2 (Phosphate import ATP-binding protein pstB OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=pstB PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 82/198 (41.41%), Postives = 121/198 (61.11%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEP-PS----GTVFLDGRDIT--DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEV-------YKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 571
            GPSG GKSTLLR  NR+++  PS    G + LDG +I   D+DV  LR +VGM+FQ P  F  ++ DN+ +G +L  +KL++ E+        K              +G  +S GQ QR+ +AR +A +PEVLLLDEPTSALDPIST  IE+++  LK  +  TI +V+H+++Q  R++D    +  G++VE+ + D
Sbjct:   38 GPSGCGKSTLLRTFNRMYDLYPSMHAEGQIILDGSNILAKDMDVNLLRARVGMVFQKPTPFPMSIYDNVAFGVRLY-EKLSKAEMDNRVEWALKKAALWLEVKDKLRASGLSLSGGQQQRLCIARGVATKPEVLLLDEPTSALDPISTGAIEELITDLKNDY--TIAIVTHNMQQAARVSDYTAYMYLGDMVEMGETD 232          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_METAC (Phosphate import ATP-binding protein pstB OS=Methanosarcina acetivorans GN=pstB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE-----NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST +R LNR+ +        G V ++  DI +  +DV+ LR++VGM+FQ P  F  ++ DNI YGP++ G    +         +              T   +S GQ QR+ +ARTLA +PE++L DEP SALDPIST  IE++++ LKK +  TIV+V+H+++Q  R++D     + GE++E
Sbjct:   45 GPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEDEDIYEKGVDVVELRKRVGMVFQKPNPFPMSIYDNIAYGPRIHGANKKDLGGIVEFALRSAALWNETSDRLKSTALSLSGGQQQRLCIARTLAVKPEIILFDEPCSALDPISTSRIEELIMNLKKDY--TIVIVTHNMQQAARVSDYTGFFLMGELIE 233          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_COLP3 (Phosphate import ATP-binding protein pstB OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pstB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 79/192 (41.15%), Postives = 119/192 (61.98%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTE--NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKSTLLR++NR+ +       SG + L G +I D  +DV  LRRKVGM+FQ P  F  T+ +N+ YG ++ G    ++L E   +  +             ++   +S GQ QR+ +AR +A +PEVLLLDEPTSALDPIST  IE+++  LKK+   T+V+V+H+++Q  R++D    +  G+++E
Sbjct:   65 GPSGCGKSTLLRSINRMNDLVDNCHISGEINLHGSNIYDKHVDVAELRRKVGMVFQRPNPFPKTIYENVVYGLRIMGENNRRRLDEAAEQSLRSAALWNEVKDRLHESALGLSGGQQQRLVIARAIAIQPEVLLLDEPTSALDPISTLTIEELINDLKKQ--FTVVIVTHNMQQAARVSDQTAFMYMGDLIE 254          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB1_VIBCH (Phosphate import ATP-binding protein pstB 1 OS=Vibrio cholerae GN=pstB1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 80/197 (40.61%), Postives = 119/197 (60.41%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE------NEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 571
            GPSG GKSTLLR +NR+ +   GT     V L G++I   D+DV +LRR+VGM+FQ P  F  ++ +N+ YG +L+G K +        +  +             +    +S GQ QR+ +AR +A EPEVLLLDEPTSALDPIST  IE+++  LK K+  T+V+V+H+++Q  R++D    +  G+++E    D
Sbjct:   59 GPSGCGKSTLLRCINRMNDLVEGTRVEGEVKLHGKNIYHPDVDVPTLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIKNSRALDDAAEQSLRAAALWDEVKHRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELIHDLKTKY--TVVIVTHNMQQAARVSDHTAFIHMGKLIEYADTD 253          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB1_CHRSD (Phosphate import ATP-binding protein pstB 1 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=pstB1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 77/193 (39.90%), Postives = 114/193 (59.07%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDIT--DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR---GKKLTENEVY----KXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST LR LNR+ +        G V +DG D+    +D ++LRR+VGM+FQ P  F  ++ +N+ Y P++     +K  ++E+     +             + G  +S GQ QR+ +AR +A  P+V+L+DEPTSALDPIST  IED++ KLKK    TIV V+H+++Q  R+AD       GE++E
Sbjct:   45 GPSGCGKSTFLRCLNRMNDLINSVSIKGLVEMDGHDVNARGMDEVALRRRVGMVFQKPNPFPKSIYENVAYAPRMHDMVSRKADQDELVERALRDAGLWNEVKDKLHEPGTSLSGGQQQRLCIARAIAVRPDVILMDEPTSALDPISTATIEDLMDKLKK--DFTIVTVTHNMQQAARVADYTAFFHLGEMIE 235          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: METN1_PSE14 (Methionine import ATP-binding protein metN 1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=metN1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.852e-29
Identity = 83/207 (40.10%), Postives = 120/207 (57.97%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR---KVGMLFQ-IPALFEGTVADNIRYGPQLRG---KKLTENEVYKXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSEAKHPMALRFLQ 616
            G SG+GKSTLLR +NRL  P  G + +DG D+T LD   LRR   +VGM+FQ    L   TVADN+     L G   +K  +  V +             K  A++S GQ QRV +AR LA +P++LL DE TSALDP +T ++  +L ++ ++  +TIV+++H +  I+R+ D V ++  G IVE  K  D+    +HP   RF+Q
Sbjct:   38 GHSGAGKSTLLRLINRLETPSGGQIVVDGEDVTALDANGLRRFRQQVGMIFQHFNLLASKTVADNVAMPLTLAGDMSRKQIDQRVAELLKRVGLSDHAK-KYPAQLSGGQKQRVGIARALATKPKILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDAGVIVEQGKVADVFLHPQHPTTRRFVQ 243          
BLAST of FC925090 vs. ExPASy Swiss-Prot
Match: PSTB_GEOMG (Phosphate import ATP-binding protein pstB OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pstB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.725e-29
Identity = 79/193 (40.93%), Postives = 119/193 (61.66%), Query Frame = 2
Query:   20 GPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEG-TVADNIRYGPQLRG--KKLTENEVY----KXXXXXXXXXXXXXKTGAEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 556
            GPSG GKST+LR+LNR+ +       +G V LDG DI D  +D +S+RR+VGM+FQ P  F   ++ DN+  G +L G  KK   +E+     +                 E+S GQ QR+ +ART+A +PEV+L+DEP SALDPIST  IE+++ +L +K+  TI++V+H+++Q  R++D       G++VE
Sbjct:   37 GPSGCGKSTMLRSLNRMHDLFPNARVTGKVLLDGNDIYDRKVDPVSIRRRVGMVFQKPNPFPAMSIYDNVVAGYKLNGRVKKSDADEIVETSLRRVALWDEVKDRLKSNSMELSGGQQQRLCIARTIAVQPEVILMDEPASALDPISTLKIEELIEELTEKY--TIIIVTHNMQQAARVSDYTAFFYMGDLVE 227          
The following BLAST results are available for this feature:
BLAST of FC925090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CBIO1_CLOPE2.184e-2941.71Cobalt import ATP-binding protein cbiO 1 OS=Clostr... [more]
PSTB_SHEDO2.852e-2941.67Phosphate import ATP-binding protein pstB OS=Shewa... [more]
PSTB_PSYCK2.852e-2940.40Phosphate import ATP-binding protein pstB OS=Psych... [more]
PSTB_PSYA22.852e-2941.41Phosphate import ATP-binding protein pstB OS=Psych... [more]
PSTB_METAC2.852e-2939.27Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_COLP32.852e-2941.15Phosphate import ATP-binding protein pstB OS=Colwe... [more]
PSTB1_VIBCH2.852e-2940.61Phosphate import ATP-binding protein pstB 1 OS=Vib... [more]
PSTB1_CHRSD2.852e-2939.90Phosphate import ATP-binding protein pstB 1 OS=Chr... [more]
METN1_PSE142.852e-2940.10Methionine import ATP-binding protein metN 1 OS=Ps... [more]
PSTB_GEOMG3.725e-2940.93Phosphate import ATP-binding protein pstB OS=Geoba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB02FM1 TF Citrus clementina cDNA clone KN0AAP3YB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925090 ID=FC925090; Name=FC925090; organism=Citrus clementina; type=EST; length=786bp
GGTGATCATCGTTATCATTGGGCCCAGTGGAAGCGGCAAATCAACCCTGT
TGAGGGCGCTGAACCGTCTGTGGGAGCCACCCTCTGGTACGGTGTTCTTG
GACGGCCGCGATATTACTGATCTCGACGTTCTCTCTCTTCGTCGTAAAGT
TGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAGGCACAGTTGCTGATA
ATATTCGATATGGACCACAATTGAGGGGAAAGAAATTAACCGAGAATGAG
GTTTACAAGTTGCTCTCACTTGCAGACCTCGACTCCTCTTTCCTTAGCAA
AACGGGTGCCGAAATATCAGTTGGCCAAGCTCAAAGAGTTGCTCTAGCTC
GAACACTGGCCAACGAACCAGAGGTTCTGCTTCTGGATGAGCCAACGAGT
GCATTGGATCCAATATCGACACAGAACATAGAGGATGTGTTAGTGAAGCT
GAAGAAGAAACATGGAATGACAATTGTCATGGTCTCTCACAGCATCAAAC
AAATCCAAAGGATCGCCGACGTCGTTTGCCTGCTAGTGAATGGTGAGATT
GTGGAAGTTCTGAAACCTGATCTGCTCTCGGAAGCCAAGCATCCCATGGC
ACTAAGGTTTCTTCAACTCAGCGGTTAGGGAGACATGTCACTTGTTCAAT
TTTATTCCACCATGTCAACTGTGCTGTCCCATTTGTACTTGATTATGAAA
ATAAACTGAATTATGTATTACTATATGAGCAAGTATTGTACTACATATAC
TTCTTGTACTTCCTAAAAAAAAAAAAAAAAAAAAAA
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