FC925092

Overview
NameFC925092
Unique NameFC925092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length174
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
The following BLAST results are available for this feature:
BLAST of FC925092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_RAT8.485e-2389.47Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT8.485e-2389.47Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY8.485e-2389.47Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY8.485e-2389.47Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG8.485e-2389.47Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR8.485e-2389.47Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA8.485e-2389.47Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE8.485e-2389.47Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE8.485e-2389.47Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA8.485e-2389.47Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB03FM1 TF Citrus clementina cDNA clone KN0AAP3YB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925092 ID=FC925092; Name=FC925092; organism=Citrus clementina; type=EST; length=174bp
TCTTCATCGAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGT
TCAGATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAACGGAT
CCCACCAGATCAACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACG
GCCGCACGTTGGCTGACTATAACA
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