FC925092

Overview
NameFC925092
Unique NameFC925092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length174
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.485e-23
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.108e-22
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITL+VE+SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.890e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITL+VE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.469e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTI LEVE+SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLE+GRTLADYN
Sbjct:    4 FVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.469e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SD+I+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.469e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SD+I+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.469e-22
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITLEVE SD I+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.183e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 3 
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTITL+VE SD+IDNVK KIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    4 FVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
The following BLAST results are available for this feature:
BLAST of FC925092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_CANFA8.485e-2389.47Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR8.485e-2389.47Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN8.485e-2389.47Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY1.108e-2287.72Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EIMBO1.890e-2287.72Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_TRYBB2.469e-2287.72Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU2.469e-2287.72Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU2.469e-2287.72Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI2.469e-2287.72Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN7.183e-2285.96Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB03FM1 TF Citrus clementina cDNA clone KN0AAP3YB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925092 ID=FC925092; Name=FC925092; organism=Citrus clementina; type=EST; length=174bp
TCTTCATCGAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGT
TCAGATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAACGGAT
CCCACCAGATCAACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACG
GCCGCACGTTGGCTGACTATAACA
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