FC925092

Overview
NameFC925092
Unique NameFC925092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length174
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.381e-22
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTI LEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLE+GRTL+DYN
Sbjct:    4 FVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.018e-20
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTG TI LEVE SDTI+NVKAKIQDKE IPPDQQRLIFA KQLE+GRTL+DYN
Sbjct:    4 FVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.708e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3
Query:   27 TITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            TITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 49          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.086e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            F++TLTGKTIT+E E  DT+  VK KI DKE +P DQQRLI+AGKQLED +TLADYN
Sbjct:    4 FVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.453e-16
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    3 FIETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            FI+TLTGKTIT E E ++T+ ++K KI DKE +P DQQRLIFAGKQLED +T+ADYN
Sbjct:    4 FIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.604e-13
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            ++TLTGK I +++E +DTID VK ++++KE IPP QQRLI+AGKQL D +T  DYN
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.095e-13
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            ++TLTGK I +++E +DTID +K ++++KE IPP QQRLI+AGKQL D +T  DYN
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.095e-13
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            ++TLTGK I +++E +DTID +K ++++KE IPP QQRLI+AGKQL D +T  DYN
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.095e-13
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADYN 173
            ++TLTGK I +++E +DTID +K ++++KE IPP QQRLI+AGKQL D +T  DYN
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60          
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.667e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I L++E +D ++ +K K+++KE IPP QQRLIFAGKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADY 59          
The following BLAST results are available for this feature:
BLAST of FC925092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
UBIQ_LEIMA9.381e-2285.96Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA3.018e-2082.46Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE9.708e-1991.84Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP9.086e-1770.18Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC3.453e-1668.42Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN1.604e-1358.93NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ2.095e-1357.14NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.095e-1357.14NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.095e-1357.14NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL4.667e-1356.36NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB03FM1 TF Citrus clementina cDNA clone KN0AAP3YB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925092 ID=FC925092; Name=FC925092; organism=Citrus clementina; type=EST; length=174bp
TCTTCATCGAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGT
TCAGATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAACGGAT
CCCACCAGATCAACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACG
GCCGCACGTTGGCTGACTATAACA
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