FC925092

Overview
NameFC925092
Unique NameFC925092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length174
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +DTID +K ++++KE IPP QQRLI+AGKQL D +T  DY
Sbjct:    5 VKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +D +D +K ++++KE IPP QQRLIF+GKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +D ++ +K ++++KE IPP QQRLI++GKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +D ++ +K ++++KE IPP QQRLI++GKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +D ++ +K ++++KE IPP QQRLI++GKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +D ++ +K ++++KE IPP QQRLI++GKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 27/55 (49.09%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            ++TLTGK I +++E +D ++ +K ++++KE IPP QQRLI++GKQ+ D +T ADY
Sbjct:    5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 59
[Close]
BLAST of FC925092 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.501e-11
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:    6 IETLTGKTITLEVESSDTIDNVKAKIQDKERIPPDQQRLIFAGKQLEDGRTLADY 170
            + TLTGK I +++E +DT+D +K +++++E IPP QQRLI+ GKQL D +T  DY
Sbjct:    5 VRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDY 59
The following BLAST results are available for this feature:
BLAST of FC925092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RUB2_ARATH1.040e-1256.36NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME1.040e-1252.73NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
NEDD8_RAT8.801e-1249.09NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT8.801e-1249.09NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE8.801e-1249.09NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN8.801e-1249.09NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN8.801e-1249.09NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ1.501e-1150.91NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB03FM1 TF Citrus clementina cDNA clone KN0AAP3YB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925092 ID=FC925092; Name=FC925092; organism=Citrus clementina; type=EST; length=174bp
TCTTCATCGAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGT
TCAGATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAACGGAT
CCCACCAGATCAACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACG
GCCGCACGTTGGCTGACTATAACA
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