FC925121

Overview
NameFC925121
Unique NameFC925121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROMM (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplD PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.859e-41
Identity = 86/189 (45.50%), Postives = 126/189 (66.67%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G++ G+  L+LK +   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL            E+ IVV++F    + PKT+E  +A+ R GL    K   ++   SE + +S RN+  +K++    LN+FD+L A +LVL+
Sbjct:   11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIEDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQLNVFDLLHANSLVLS 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROMA (50S ribosomal protein L4 OS=Prochlorococcus marinus GN=rplD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 82/193 (42.49%), Postives = 127/193 (65.80%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            +L + G++ G+  L+LK A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL             + I V++F  K + PKTKE  + + R  +    K   ++ + S+ + +S RN+  +K++    LN+FD+L+A +L++
Sbjct:    6 VLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRL--ALRTALMARFNDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLIAAEHLNVFDLLNANSLII 196          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROM3 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 85/189 (44.97%), Postives = 126/189 (66.67%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G++ G+  L+LK +   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL            E+ IVV++F    + PKT+E  +A+ R G+    K   ++   SE + +S RN+  +K++    LN+FD+L A +LVL+
Sbjct:   11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARLEDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQLNVFDLLHANSLVLS 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_PORYE (50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 85/194 (43.81%), Postives = 125/194 (64.43%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + ++ G+  G   L+LK  + D+   +VHRAL+     KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPR ++ K+NKKE++L             NT++VE F+  F +PKTK F+EA+ RW LD  +K   +V +   NV  S RN+  +++++  TLN+  +L A  +++T
Sbjct:   11 VYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRNLHNVELISADTLNIMALLAAHKIIIT 201          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_PORPU (50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea GN=rpl4 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 88/194 (45.36%), Postives = 125/194 (64.43%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + ++ G+  G   L+LK  + D+   +VHRAL+     KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPR ++ K+NKKE +L             NT+VVE FD  F++PKTK FIEA+ RW LD  +K   +V +   NV  S RN+  +++++  TLN+  +L A  +++T
Sbjct:   11 VYNWEGQVSGNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTLNIMALLAAHKVIIT 201          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_SYNJA (50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplD PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 84/196 (42.86%), Postives = 125/196 (63.78%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            + ++ GE +G   L LK A P+TA  +++ AL   M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGP+ R++++ +N+KE++L            E+ IVVE+F  +   PKT+   +A+ RWG+   Q A  +V E SE VE++ RNI  +K++    LN+FD+L+ + +++T S
Sbjct:    6 VKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQLNVFDLLNVDWVLITTS 199          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_SYNJB (50S ribosomal protein L4 OS=Synechococcus sp. GN=rplD PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.959e-38
Identity = 83/196 (42.35%), Postives = 125/196 (63.78%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            + ++ GE +G   L LK A P+TA  +++ AL   M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL   GGV+FGP+ R++++ +N+KE++L            E+ IVVE+F  +   PKT+   +A+ RWG+   Q A  +V E SE VE++ RNI  +K++    +N+FD+L+ + +++T S
Sbjct:    6 VKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQINVFDLLNVDWVLITVS 199          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THETN (50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis GN=rplD PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35
Identity = 84/196 (42.86%), Postives = 117/196 (59.69%), Query Frame = 3
Query:  135 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +P+ +  GE++GE  L           AV+H+A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GGVVFGPKPRD+S K+ KK KRL               IV++EF  K E+PKTK+  E ++ +     + A  +V +  +NVE S+RN+   K L    LN +D+L  E  ++T
Sbjct:    4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLEQPKTKKVAELLKNFN---AKSALIVVPQGEKNVELSARNMPNAKALYANLLNTYDVLKYEKFIIT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34
Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + +  GE++GE  L            V+H A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GG+VFGPKPRD+S K+ KK KRL               IV++EF  K ++PKTK+ +E ++ + +D    A  +V E  +NVE S+RNI  +K L    LN +DIL  +  ++T
Sbjct:    6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARNIPGVKTLYANYLNTYDILKYDKFIIT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34
Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + +  GE++GE  L            V+H A++  + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P    GG+VFGPKPRD+S K+ KK KRL               IV++EF  K ++PKTK+ +E ++ + +D    A  +V E  +NVE S+RNI  +K L    LN +DIL  +  ++T
Sbjct:    6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARNIPGVKTLYANYLNTYDILKYDKFIIT 194          
The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PROMM2.859e-4145.5050S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROMA3.735e-4142.4950S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_PROM34.878e-4144.9750S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RK4_PORYE3.495e-3943.8150S ribosomal protein L4, chloroplastic OS=Porphyr... [more]
RK4_PORPU3.495e-3945.3650S ribosomal protein L4, chloroplastic OS=Porphyr... [more]
RL4_SYNJA1.328e-3842.8650S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_SYNJB2.959e-3842.3550S ribosomal protein L4 OS=Synechococcus sp. GN=r... [more]
RL4_THETN6.822e-3542.8650S ribosomal protein L4 OS=Thermoanaerobacter ten... [more]
RL4_THEPX2.592e-3442.7850S ribosomal protein L4 OS=Thermoanaerobacter sp.... [more]
RL4_THEP32.592e-3442.7850S ribosomal protein L4 OS=Thermoanaerobacter pse... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 TF Citrus clementina cDNA clone KN0AAP8YD13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAA
back to top