FC925121
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROMM (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplD PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.859e-41 Identity = 86/189 (45.50%), Postives = 126/189 (66.67%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G++ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL E+ IVV++F + PKT+E +A+ R GL K ++ SE + +S RN+ +K++ LN+FD+L A +LVL+ Sbjct: 11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARIEDVIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQLNVFDLLHANSLVLS 197
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROMA (50S ribosomal protein L4 OS=Prochlorococcus marinus GN=rplD PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41 Identity = 82/193 (42.49%), Postives = 127/193 (65.80%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719 +L + G++ G+ L+LK A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++ +N+KE+RL + I V++F K + PKTKE + + R + K ++ + S+ + +S RN+ +K++ LN+FD+L+A +L++ Sbjct: 6 VLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRL--ALRTALMARFNDVIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLIAAEHLNVFDLLNANSLII 196
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROM3 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplD PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41 Identity = 85/189 (44.97%), Postives = 126/189 (66.67%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G++ G+ L+LK + TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+G+ RTPLRPGGG++FGPKPR +++ +N+KE+RL E+ IVV++F + PKT+E +A+ R G+ K ++ SE + +S RN+ +K++ LN+FD+L A +LVL+ Sbjct: 11 GKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRL--ALRTALMARLEDVIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLIAADQLNVFDLLHANSLVLS 197
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_PORYE (50S ribosomal protein L4, chloroplastic OS=Porphyra yezoensis GN=rpl4 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39 Identity = 85/194 (43.81%), Postives = 125/194 (64.43%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 + ++ G+ G L+LK + D+ +VHRAL+ KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE++L NT++VE F+ F +PKTK F+EA+ RW LD +K +V + NV S RN+ +++++ TLN+ +L A +++T Sbjct: 11 VYNWEGQVSGNADLNLK-VSQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSV--NTLIVENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRNLHNVELISADTLNIMALLAAHKIIIT 201
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_PORPU (50S ribosomal protein L4, chloroplastic OS=Porphyra purpurea GN=rpl4 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39 Identity = 88/194 (45.36%), Postives = 125/194 (64.43%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 + ++ G+ G L+LK + D+ +VHRAL+ KR+G+A+T TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPR ++ K+NKKE +L NT+VVE FD F++PKTK FIEA+ RW LD +K +V + NV S RN+ +++++ TLN+ +L A +++T Sbjct: 11 VYNWEGQVSGNADLNLK-ISKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSV--NTLVVENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTLNIMALLAAHKVIIT 201
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_SYNJA (50S ribosomal protein L4 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplD PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38 Identity = 84/196 (42.86%), Postives = 125/196 (63.78%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728 + ++ GE +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++L E+ IVVE+F + PKT+ +A+ RWG+ Q A +V E SE VE++ RNI +K++ LN+FD+L+ + +++T S Sbjct: 6 VKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQLNVFDLLNVDWVLITTS 199
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_SYNJB (50S ribosomal protein L4 OS=Synechococcus sp. GN=rplD PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.959e-38 Identity = 83/196 (42.35%), Postives = 125/196 (63.78%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728 + ++ GE +G L LK A P+TA +++ AL M N R+G A T TR EVRGGGRKP+ QK TGRAR GS R+PL GGV+FGP+ R++++ +N+KE++L E+ IVVE+F + PKT+ +A+ RWG+ Q A +V E SE VE++ RNI +K++ +N+FD+L+ + +++T S Sbjct: 6 VKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQL--ALRTALQSRVEDLIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGLDQINVFDLLNVDWVLITVS 199
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THETN (50S ribosomal protein L4 OS=Thermoanaerobacter tengcongensis GN=rplD PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 6.822e-35 Identity = 84/196 (42.86%), Postives = 117/196 (59.69%), Query Frame = 3 Query: 135 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 +P+ + GE++GE L AV+H+A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GGVVFGPKPRD+S K+ KK KRL IV++EF K E+PKTK+ E ++ + + A +V + +NVE S+RN+ K L LN +D+L E ++T Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLEQPKTKKVAELLKNFN---AKSALIVVPQGEKNVELSARNMPNAKALYANLLNTYDVLKYEKFIIT 194
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEPX (50S ribosomal protein L4 OS=Thermoanaerobacter sp. (strain X514) GN=rplD PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34 Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 + + GE++GE L V+H A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRL IV++EF K ++PKTK+ +E ++ + +D A +V E +NVE S+RNI +K L LN +DIL + ++T Sbjct: 6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARNIPGVKTLYANYLNTYDILKYDKFIIT 194
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEP3 (50S ribosomal protein L4 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplD PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34 Identity = 83/194 (42.78%), Postives = 116/194 (59.79%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 + + GE++GE L V+H A++ + N+R+GT ST TRGEVRGGGRKP+ QK TGRAR+GS R P GG+VFGPKPRD+S K+ KK KRL IV++EF K ++PKTK+ +E ++ + +D A +V E +NVE S+RNI +K L LN +DIL + ++T Sbjct: 6 VYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEIIVLDEF--KLDQPKTKKVVELLKNFNVD---SALIVVPEGEKNVELSARNIPGVKTLYANYLNTYDILKYDKFIIT 194 The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bpback to top |