FC925121

Overview
NameFC925121
Unique NameFC925121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:392..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_EUBE2 (50S ribosomal protein L4 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.858e-32
Identity = 77/194 (39.69%), Postives = 112/194 (57.73%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + +  G+++G   L+      +    +VH A++  + N R+GT S  TR EV GGGRKP+ QK TG AR+GS R+P   GGGVVF PKPRD+S K+NKKEKR+               +V++ F+   +  KTK+F E M    +D   KA  ++   ++NV  S RNI T+K+     +N +D+L  ETLV+T
Sbjct:    6 VYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVADNKIVVLDAFN--LDEIKTKKFAEVMSNLKVD---KALVVIEGENKNVVLSGRNIPTVKVSATNEINTYDVLKYETLVVT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.405e-32
Identity = 79/195 (40.51%), Postives = 116/195 (59.49%), Query Frame = 3
Query:  135 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            +P+ +  G++IGE  L+           V+H+A++  + N+R+GT +  TR EVRGGGRKP+ QK TGRAR+GS R P    GGVVF  KPRD+SI + KK KRL             N IV++ +D    + KTKE +  ++  GL+  QKA  ++ E +E ++KS++NI  +K L    LN+FDIL  +  V+
Sbjct:    4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNLIVLDRWD--MNQYKTKEVLRVLKNLGLE-NQKALIVIPEKNEYLQKSTKNIPEVKTLQVGNLNVFDILKYDKFVI 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_EUBR3 (50S ribosomal protein L4 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 75/194 (38.66%), Postives = 113/194 (58.25%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + +  G+++ +  L+      +    +VH A++  + NKR+GT    TR EVRGGGRKP+ QK TG AR+GS R+P   GGGVVF P PRD+S K+NKKEKR                +VV+E   K +  KTK+F+E ++   +   +KA  ++ ++ E V  S+ NI T+K      LN+FD+L  +T+V+T
Sbjct:    6 VYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVENKFVVVDEL--KLDEIKTKKFVEVLKNLNV---EKALVVLNDMDEKVIASAANIPTVKTTQTNELNVFDVLKYDTVVVT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_DESHY (50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain Y51) GN=rplD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 74/194 (38.14%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +++  G  +GE  LD      +    V+H+A++  + ++RRGT STL RGEVRGGGRKP+ QK TGRAR GS R+PL  GG V+FGPKPR +   + KK +RL            +  IV+E  D      KT+E ++ ++   L+  +KA  +  E  E +E+S+RNI  +K      +N++D+L+++ +V+T
Sbjct:    6 VVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKLIVLE--DLSLNEAKTREMVKVLQ--ALNVSKKALIVTDEFMETIERSARNIAGIKTTAVEGMNIYDLLNSDVIVMT 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_HALOH (50S ribosomal protein L4 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplD PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 77/190 (40.53%), Postives = 110/190 (57.89%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            TG ++G+  L       +    VVH+ +   +   RRGTAST TRGEV GGGRKP+ QK TGRAR GS R+PL  GGG+VFGP+PR    K+ KK K+L            E  I+++E   KF+ PKTK+ +E +    L+ K K   ++ +   N+  S+RNI  +K L    LN FD+L+ + +V++
Sbjct:   10 TGNRVGDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGGGRKPWRQKGTGRARHGSIRSPLWVGGGIVFGPRPRKHIKKVPKKVKKLALRSILSYKSQNEELIILDEL--KFDTPKTKQVVELLSNLNLEGK-KVLIILPDKDANIYLSARNIPGVKTLVVDALNAFDLLNNDCIVMS 196          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_GRATL (50S ribosomal protein L4, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl4 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 76/189 (40.21%), Postives = 107/189 (56.61%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            T EK  E  +   S   +    ++HRALI  + N R   A T TRGEV GGGRKP+ QK TGRAR GSNR+PL  GGGV+FGP+ + +  KINKKEK+L            +NTIV E F  K   P TK  +  ++++ LD       +V E S ++  S+RN+  +++L    LN+  +L A  +++
Sbjct:   17 TKEKESEEIVVKLSKQSNKKIYILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFGPRHKKYVNKINKKEKQL--ALRILINNKFKNTIVTENFISKISTPNTKILVNNLKKYNLDTNNNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIVSLLKANHIII 203          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PELTS (50S ribosomal protein L4 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 76/189 (40.21%), Postives = 110/189 (58.20%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            GE++GE  L  +    +    V+H A++  + N+R GT  T TR EVRGGGRKP+ QK TGRAR GS R+PL  GGG++FGP PRD+S  + +K +RL             + +V++E   K ++PKTKE    +    +D    A  +  E  E VE+S+RNI  +K +    LN++DIL  + LV+T
Sbjct:   11 GEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGGGRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNSGDILVLDEL--KLDQPKTKEMARILNNLKVD---DALLVTAEKDEAVERSARNIPNIKPVQAALLNVYDILAYDKLVMT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_NATTJ (50S ribosomal protein L4 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 79/189 (41.80%), Postives = 106/189 (56.08%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G ++GE  LD    A D    ++H A+   + +KRRGTAS  TR EVRGGGRKP+ QK TGRAR GS R+P+  GGG+ F PKPRD+S K+ KK KR                +++EE     E PKTK+ IE +    L    KA  +      NV +S+RNI  +       LN++D+L+ + LVLT
Sbjct:   11 GSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGGGRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNNGEIVILEEL--TMEAPKTKKIIEMLE--NLSINHKAMIVTGASDLNVYRSTRNIPGVSSALANNLNVYDVLNHDYLVLT 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_GEOLS (50S ribosomal protein L4 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.504e-31
Identity = 71/196 (36.22%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  135 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + + +   EKIGE  LD +  A +    ++H+AL   + N+R GT  T TR EV GGG+KP+ QK TG AR+G +R P  PGGG VFGP+P+ +++ INKK ++             E   V+++ +  F +  TK+F   M+++ L   +++  +  E S N+  SSRN+  +K+L    LN+FD+L  + +V+T
Sbjct:    4 IALYNMNREKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGGGKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKSEKITVLDQIE--FAKISTKDFAGFMKKFDL---ERSLIITEEPSTNLALSSRNVPYVKLLKADGLNVFDVLKYQNIVMT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_DESHD (50S ribosomal protein L4 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.504e-31
Identity = 73/194 (37.63%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +++  G  +GE  LD      +    V+H+A++  + ++RRGT STL RGEVRGGGRKP+ QK TGRAR GS R+PL  GG V+FGPKPR +   + KK +RL            +  IV+E  D      KT+E ++ ++   L+  +KA  +  E  E +++S+RNI  +K      +N++D+L+++ +V+T
Sbjct:    6 VVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKLIVLE--DLSLNEAKTREMVKVLQ--ALNVGKKALIVTDEFMETIDRSARNIAGIKTTAVEGMNIYDLLNSDVIVMT 195          
The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_EUBE21.858e-3239.6950S ribosomal protein L4 OS=Eubacterium eligens (s... [more]
RL4_ANATD5.405e-3240.5150S ribosomal protein L4 OS=Anaerocellum thermophi... [more]
RL4_EUBR37.059e-3238.6650S ribosomal protein L4 OS=Eubacterium rectale (s... [more]
RL4_DESHY9.220e-3238.1450S ribosomal protein L4 OS=Desulfitobacterium haf... [more]
RL4_HALOH1.204e-3140.5350S ribosomal protein L4 OS=Halothermothrix orenii... [more]
RK4_GRATL1.573e-3140.2150S ribosomal protein L4, chloroplastic OS=Gracila... [more]
RL4_PELTS2.683e-3140.2150S ribosomal protein L4 OS=Pelotomaculum thermopr... [more]
RL4_NATTJ2.683e-3141.8050S ribosomal protein L4 OS=Natranaerobius thermop... [more]
RL4_GEOLS3.504e-3136.2250S ribosomal protein L4 OS=Geobacter lovleyi (str... [more]
RL4_DESHD3.504e-3137.6350S ribosomal protein L4 OS=Desulfitobacterium haf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 TF Citrus clementina cDNA clone KN0AAP8YD13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAA
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