FC925121
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROA2 (50S ribosomal protein L4 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplD PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.127e-29 Identity = 75/196 (38.27%), Postives = 113/196 (57.65%), Query Frame = 3 Query: 135 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719 L +++ G + GE LD K A + V+ + + + NKR+GT R EVRGGG+KPY QK TG AR+GS+R+ L GGG +FGP+P + +K+N+K KRL IV+E+F FE+ KT++F + ++ GLD K K L+ E +E + +S RNI L + + +DILD +T+V+ Sbjct: 3 LKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGGGKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGEGRIIVIEDF--TFEQIKTRQFADILKNLGLDQK-KTLVLLPEHNEIINRSGRNIPVLNIRVADQASTYDILDCQTVVM 195
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PETMO (50S ribosomal protein L4 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplD PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29 Identity = 85/213 (39.91%), Postives = 120/213 (56.34%), Query Frame = 3 Query: 129 SPLPILSFTGEKIGETYLDLKSAA--PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLV---MEVSENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVLT 722 S + I + EK+G LD+K D V++R + + NKR GTAST TR EV GGGRKP+ QK TGRAR GS R+PL GGV FGPKPR++ +NKK KRL N IV++E KFE+P+TK+ + ++G++ K FL E EN + S+RN+ +K++ LN+FD++++E +VLT Sbjct: 2 SQIDIYNIQNEKVGT--LDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNLIVLDEV--KFEKPRTKDVKNILSKFGME-DTKVLFLFPYHQEQYENFKLSARNLPKVKVIIADNPGQNKKNVDGLNVFDLINSEKIVLT 209
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29 Identity = 75/194 (38.66%), Postives = 110/194 (56.70%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 + + GE++GE L + + V+H A+ + N+R+GT T TR EVRGGGRKP+ QK TGRAR GS+R+P+ GG+VFGP PRD++I + KK +RL +N IV++ + PKTK+ + + D KA + NVEKS+RNI +K L +N++D+L LV+T Sbjct: 6 LYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRILGNLKAD---KALVVTATRDLNVEKSARNIEGVKPLKADGVNVYDLLKYTKLVIT 194
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_PHATR (50S ribosomal protein L4, chloroplastic OS=Phaeodactylum tricornutum GN=rpl4 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29 Identity = 65/168 (38.69%), Postives = 106/168 (63.10%), Query Frame = 3 Query: 219 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 +VH+ LI ++R+ T+S+ TR EVRGGGRKP+ QK TG+AR GSNR+PL GGGV+FGPKP+ S+K+NKKE++L N +++E + PKTK F++ + ++ +QK +V + + ++ +++N+ +++L +LN IL A ++LT Sbjct: 37 LVHKDLIRHFGSQRQATSSSKTRSEVRGGGRKPWRQKGTGKARAGSNRSPLWKGGGVIFGPKPKKISLKLNKKERQL--ALQTLIYNKKNNILIIENLETGMTEPKTKAFVKICQDCQINLEQKVLLVVTDKTSVLKLATQNLKNVELLAASSLNTLSILKARQIILT 202
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29 Identity = 69/189 (36.51%), Postives = 109/189 (57.67%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G+K+G+ L K + + V+H+ ++ + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P GGVVF PKPRD+S+ I K KR+ +++E + + PKTKE ++ + + +K + E ++N+ KS+RNI + +L +N++DIL + ++T Sbjct: 11 GQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFN---AKKTLIVTEESNKNIYKSARNIEGVTVLPVNNINVYDILRYDKFIIT 194
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEMA (50S ribosomal protein L4 OS=Thermotoga maritima GN=rplD PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29 Identity = 85/213 (39.91%), Postives = 113/213 (53.05%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE----NVEKSSRNIGTLKMLTPRT---------------LNLFDILDAETLVLT 722 +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GGVV GPKPRDWS K+NKK K+L +V++ D K ERPKTK E ++ L K T +V+ E NV+ S RN+ +K++ LN+FD+L + LVLT Sbjct: 6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLD--DLKLERPKTKSLKEILQ--NLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLT 214
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THENN (50S ribosomal protein L4 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplD PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29 Identity = 84/213 (39.44%), Postives = 112/213 (52.58%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE----NVEKSSRNIGTLKMLTPRT---------------LNLFDILDAETLVLT 722 +L+ GEK+G + D V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GGV GPKPRDWS K+NKK KRL +V+E D K ERPKTK E ++ LD K +V+ E NV+ S +N+ +K++ LN+FD+L + L+LT Sbjct: 6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRENKLLVLE--DLKLERPKTKSLKEILQ--NLDLADKKALIVLPWKEEGYVNVKLSGKNLPNVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLILT 214
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_GEOSW (50S ribosomal protein L4 OS=Geobacillus sp. (strain WCH70) GN=rplD PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29 Identity = 74/190 (38.95%), Postives = 108/190 (56.84%), Query Frame = 3 Query: 153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 +GE IGE L+ + + V+ A+I + R+GT T R EV GGGRKP+ QK TGRAR+GS R P GGG VFGP PR +S K+ KK +RL N +V++ E PKTKE ++ + +D +KA + +V+ENV S+RNI + ++T +N+ D+L+ + LV+T Sbjct: 10 SGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNIVVLDNL--TLEAPKTKEMVKILNNLSVD--RKALIVTDDVNENVTLSARNIPGVTVVTANGINVLDVLNHDKLVIT 195
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOPS (50S ribosomal protein L4 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplD PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29 Identity = 69/189 (36.51%), Postives = 114/189 (60.32%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G+++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E+ + FE PKTKE ++ + + +K + EV+ENV KS+RNI + ++ +N++D+L+ +TL++T Sbjct: 11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLEDLN--FEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMIT 192
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEM4 (50S ribosomal protein L4 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplD PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28 Identity = 83/205 (40.49%), Postives = 114/205 (55.61%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS--ENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVL 719 + + GE IG L + A + + V+ R + + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P GGV GPKPR + ++NKK KRL N +VV+ D KFE+P+TK+ E ++ GL+ ++ L + S ENV+ S RNI +K+L LN++DIL+ + LVL Sbjct: 6 LFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD--DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVLIADNPGVDRVNIDGLNVYDILNHDKLVL 208 The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bpback to top |