FC925121

Overview
NameFC925121
Unique NameFC925121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:392..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PROA2 (50S ribosomal protein L4 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.127e-29
Identity = 75/196 (38.27%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  135 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            L +++  G + GE   LD K  A   +   V+  + + + NKR+GT     R EVRGGG+KPY QK TG AR+GS+R+ L  GGG +FGP+P  + +K+N+K KRL               IV+E+F   FE+ KT++F + ++  GLD K K   L+ E +E + +S RNI  L +      + +DILD +T+V+
Sbjct:    3 LKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGGGKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGEGRIIVIEDF--TFEQIKTRQFADILKNLGLDQK-KTLVLLPEHNEIINRSGRNIPVLNIRVADQASTYDILDCQTVVM 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_PETMO (50S ribosomal protein L4 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 85/213 (39.91%), Postives = 120/213 (56.34%), Query Frame = 3
Query:  129 SPLPILSFTGEKIGETYLDLKSAA--PDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLV---MEVSENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVLT 722
            S + I +   EK+G   LD+K      D    V++R +   + NKR GTAST TR EV GGGRKP+ QK TGRAR GS R+PL   GGV FGPKPR++   +NKK KRL             N IV++E   KFE+P+TK+    + ++G++   K  FL     E  EN + S+RN+  +K++              LN+FD++++E +VLT
Sbjct:    2 SQIDIYNIQNEKVGT--LDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNLIVLDEV--KFEKPRTKDVKNILSKFGME-DTKVLFLFPYHQEQYENFKLSARNLPKVKVIIADNPGQNKKNVDGLNVFDLINSEKIVLT 209          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 75/194 (38.66%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + +  GE++GE  L  +    +    V+H A+   + N+R+GT  T TR EVRGGGRKP+ QK TGRAR GS+R+P+   GG+VFGP PRD++I + KK +RL            +N IV++      + PKTK+ +  +     D   KA  +      NVEKS+RNI  +K L    +N++D+L    LV+T
Sbjct:    6 LYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRILGNLKAD---KALVVTATRDLNVEKSARNIEGVKPLKADGVNVYDLLKYTKLVIT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RK4_PHATR (50S ribosomal protein L4, chloroplastic OS=Phaeodactylum tricornutum GN=rpl4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 65/168 (38.69%), Postives = 106/168 (63.10%), Query Frame = 3
Query:  219 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +VH+ LI    ++R+ T+S+ TR EVRGGGRKP+ QK TG+AR GSNR+PL  GGGV+FGPKP+  S+K+NKKE++L             N +++E  +     PKTK F++  +   ++ +QK   +V + +  ++ +++N+  +++L   +LN   IL A  ++LT
Sbjct:   37 LVHKDLIRHFGSQRQATSSSKTRSEVRGGGRKPWRQKGTGKARAGSNRSPLWKGGGVIFGPKPKKISLKLNKKERQL--ALQTLIYNKKNNILIIENLETGMTEPKTKAFVKICQDCQINLEQKVLLVVTDKTSVLKLATQNLKNVELLAASSLNTLSILKARQIILT 202          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 69/189 (36.51%), Postives = 109/189 (57.67%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G+K+G+  L  K    +  + V+H+ ++  + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P    GGVVF PKPRD+S+ I K  KR+               +++E  +   + PKTKE ++ +  +     +K   +  E ++N+ KS+RNI  + +L    +N++DIL  +  ++T
Sbjct:   11 GQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFN---AKKTLIVTEESNKNIYKSARNIEGVTVLPVNNINVYDILRYDKFIIT 194          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEMA (50S ribosomal protein L4 OS=Thermotoga maritima GN=rplD PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 85/213 (39.91%), Postives = 113/213 (53.05%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE----NVEKSSRNIGTLKMLTPRT---------------LNLFDILDAETLVLT 722
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GGVV GPKPRDWS K+NKK K+L               +V++  D K ERPKTK   E ++   L    K T +V+   E    NV+ S RN+  +K++                   LN+FD+L  + LVLT
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLD--DLKLERPKTKSLKEILQ--NLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLT 214          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THENN (50S ribosomal protein L4 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplD PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 84/213 (39.44%), Postives = 112/213 (52.58%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE----NVEKSSRNIGTLKMLTPRT---------------LNLFDILDAETLVLT 722
            +L+  GEK+G   +       D    V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GGV  GPKPRDWS K+NKK KRL               +V+E  D K ERPKTK   E ++   LD   K   +V+   E    NV+ S +N+  +K++                   LN+FD+L  + L+LT
Sbjct:    6 LLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRENKLLVLE--DLKLERPKTKSLKEILQ--NLDLADKKALIVLPWKEEGYVNVKLSGKNLPNVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLILT 214          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_GEOSW (50S ribosomal protein L4 OS=Geobacillus sp. (strain WCH70) GN=rplD PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 74/190 (38.95%), Postives = 108/190 (56.84%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +GE IGE  L+      +  + V+  A+I    + R+GT  T  R EV GGGRKP+ QK TGRAR+GS R P   GGG VFGP PR +S K+ KK +RL             N +V++      E PKTKE ++ +    +D  +KA  +  +V+ENV  S+RNI  + ++T   +N+ D+L+ + LV+T
Sbjct:   10 SGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNIVVLDNL--TLEAPKTKEMVKILNNLSVD--RKALIVTDDVNENVTLSARNIPGVTVVTANGINVLDVLNHDKLVIT 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOPS (50S ribosomal protein L4 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 69/189 (36.51%), Postives = 114/189 (60.32%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G+++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E+ +  FE PKTKE ++ +  +     +K   +  EV+ENV KS+RNI  + ++    +N++D+L+ +TL++T
Sbjct:   11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLEDLN--FEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMIT 192          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEM4 (50S ribosomal protein L4 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 83/205 (40.49%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVS--ENVEKSSRNIGTLKMLTPRT----------LNLFDILDAETLVL 719
            + +  GE IG   L  +  A +  + V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P    GGV  GPKPR +  ++NKK KRL             N +VV+  D KFE+P+TK+  E ++  GL+ ++    L  + S  ENV+ S RNI  +K+L              LN++DIL+ + LVL
Sbjct:    6 LFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD--DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVLIADNPGVDRVNIDGLNVYDILNHDKLVL 208          
The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PROA21.127e-2938.2750S ribosomal protein L4 OS=Prosthecochloris aestu... [more]
RL4_PETMO1.472e-2939.9150S ribosomal protein L4 OS=Petrotoga mobilis (str... [more]
RL4_DESRM1.472e-2938.6650S ribosomal protein L4 OS=Desulfotomaculum reduc... [more]
RK4_PHATR1.922e-2938.6950S ribosomal protein L4, chloroplastic OS=Phaeoda... [more]
RL4_CLOTE2.511e-2936.5150S ribosomal protein L4 OS=Clostridium tetani GN=... [more]
RL4_THEMA7.305e-2939.9150S ribosomal protein L4 OS=Thermotoga maritima GN... [more]
RL4_THENN9.541e-2939.4450S ribosomal protein L4 OS=Thermotoga neapolitana... [more]
RL4_GEOSW9.541e-2938.9550S ribosomal protein L4 OS=Geobacillus sp. (strai... [more]
RL4_CLOPS9.541e-2936.5150S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_THEM41.246e-2840.4950S ribosomal protein L4 OS=Thermosipho melanesien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 TF Citrus clementina cDNA clone KN0AAP8YD13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAA
back to top