FC925121
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_SYNAS (50S ribosomal protein L4 OS=Syntrophus aciditrophicus (strain SB) GN=rplD PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28 Identity = 71/193 (36.79%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719 + K+ E L+ + AV++ + M ++R GTA+T R +V GGG+KP+ QK TGRAR G++R+P+ GGG+VFGP PRD+ + KK ++ + +V+++F + KTK+F E + R+GL +KA F+ E +E +EKSSRNI +KM+ LN++D+L+ E LV+ Sbjct: 16 VFDINKNKVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDF--PLDEIKTKKFKEVVDRFGL---KKALFVTEERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVI 203
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_ALKMQ (50S ribosomal protein L4 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplD PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28 Identity = 71/194 (36.60%), Postives = 109/194 (56.19%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 + + +G+K+ E L + V++ A+ + NKR+GT S TR EVRGGGRKP+ QK TGRAR G+ R+PL GGG VF PKPRD S + +K KRL E +V++E + PKTK+ + ++ L+ +K +V E +E + KS+ NI + T+N++DIL+ + ++T Sbjct: 6 VYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEELLVLDEL--SLDTPKTKDMVNILK--NLNADKKVLLVVGEKNEAIIKSASNIPGVTTALVNTINVYDILNHDKFIIT 195
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_LYSSC (50S ribosomal protein L4 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplD PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28 Identity = 74/196 (37.76%), Postives = 110/196 (56.12%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728 +LS TG +GE L+ + AV+ A++ + R+G R EV GGGRKP+ QK TGRAR+GS R+P GGG+VFGP PR +S K+ KK +RL +N +V++ PKTKEF + ++ L+ +K+ F+ ++ ENV S+RNI + +LT +N+ D+L E +V T S Sbjct: 6 VLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDAL--TLAAPKTKEFTKILKDLSLE--KKSLFVTADLDENVALSARNIPGVTVLTANGINVLDLLGHEKVVFTKS 197
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28 Identity = 71/167 (42.51%), Postives = 98/167 (58.68%), Query Frame = 3 Query: 219 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719 ++H + + + KR+GT +T TRG RGGG KP+ QK TGRAR GS R+PL GGG FGP+PRD+S K+NKK +RL E +VV+ D KTK F+E GL +KA +V + + S+RNI +K++T LN++DIL A LV+ Sbjct: 32 ILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKMMVVKNID--LPEIKTKLFVEVAEALGL---EKALVVVKDADNKLLLSARNIPGIKLITADQLNVYDILKARQLVM 193
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOPE (50S ribosomal protein L4 OS=Clostridium perfringens GN=rplD PE=3 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28 Identity = 70/189 (37.04%), Postives = 113/189 (59.79%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G+++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E D FE PKTKE ++ + + +K + EV+ENV KS+RNI + ++ +N++D+L+ +TL++T Sbjct: 11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIRGVTVMPVNNINVYDLLNCKTLMIT 192
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOP1 (50S ribosomal protein L4 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplD PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28 Identity = 70/189 (37.04%), Postives = 113/189 (59.79%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G+++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E D FE PKTKE ++ + + +K + EV+ENV KS+RNI + ++ +N++D+L+ +TL++T Sbjct: 11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMIT 192
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEAB (50S ribosomal protein L4 OS=Thermosipho africanus (strain TCF52B) GN=rplD PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28 Identity = 86/200 (43.00%), Postives = 113/200 (56.50%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE--NVEKSSRNIGTLKML------TPRT----LNLFDILDAETLVL 719 GE IG L + A + V+ R + + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P GGV GPKPR + ++NKK KRL N IVV+E KF+RPKTK+ E ++ GL+ ++ L +V E NV+ S RNI +K++ RT LN++DIL+ + LVL Sbjct: 11 GENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKEGNLIVVDEI--KFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVIIADNPGVDRTNIDGLNVYDILNHDKLVL 208
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28 Identity = 72/190 (37.89%), Postives = 109/190 (57.37%), Query Frame = 3 Query: 153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 TG ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL N +V+E D PKTK+ + ++ GL ++KA + + +E+VE S+RNI + ++T +N+ D+L + L++T Sbjct: 10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIMT 195
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_OCEIH (50S ribosomal protein L4 OS=Oceanobacillus iheyensis GN=rplD PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28 Identity = 71/194 (36.60%), Postives = 107/194 (55.15%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 +L G +G+ L+ + V+H A++ + R+GT + R EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR +S K+ KK +RL E+ +V+E + PKTKE + ++ GL KA ++ E E V +S+ N+ + +LT LN+ D+L + L++T Sbjct: 6 LLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENI--SIDAPKTKEIVNILK--GLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEELNILDLLMHDKLIIT 195
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOBB (50S ribosomal protein L4 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplD PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28 Identity = 69/189 (36.51%), Postives = 107/189 (56.61%), Query Frame = 3 Query: 156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 G+++G+ L+ + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GG+VF PKPRD+ + I K +R+ +V+E FE PKTK+FIE + + +K + E +E V KS+RNI + ++ +N++D+L E L++T Sbjct: 11 GKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVNDGQMVVLESL--SFEAPKTKQFIEMLSAFN---AKKTLIITAESNEAVYKSARNIQGVSVIPVNNINVYDLLKFEKLIIT 194 The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bpback to top |