FC925121

Overview
NameFC925121
Unique NameFC925121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9782 contig Ccv1_Contig9782:392..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_SYNAS (50S ribosomal protein L4 OS=Syntrophus aciditrophicus (strain SB) GN=rplD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 71/193 (36.79%), Postives = 113/193 (58.55%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            +      K+ E  L+      +   AV++  +   M ++R GTA+T  R +V GGG+KP+ QK TGRAR G++R+P+  GGG+VFGP PRD+   + KK ++             +  +V+++F    +  KTK+F E + R+GL   +KA F+  E +E +EKSSRNI  +KM+    LN++D+L+ E LV+
Sbjct:   16 VFDINKNKVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDF--PLDEIKTKKFKEVVDRFGL---KKALFVTEERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVI 203          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_ALKMQ (50S ribosomal protein L4 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 71/194 (36.60%), Postives = 109/194 (56.19%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            + + +G+K+ E  L       +    V++ A+   + NKR+GT S  TR EVRGGGRKP+ QK TGRAR G+ R+PL  GGG VF PKPRD S  + +K KRL            E  +V++E     + PKTK+ +  ++   L+  +K   +V E +E + KS+ NI  +      T+N++DIL+ +  ++T
Sbjct:    6 VYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEELLVLDEL--SLDTPKTKDMVNILK--NLNADKKVLLVVGEKNEAIIKSASNIPGVTTALVNTINVYDILNHDKFIIT 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_LYSSC (50S ribosomal protein L4 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplD PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 74/196 (37.76%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPS 728
            +LS TG  +GE  L+      +   AV+  A++    + R+G      R EV GGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR +S K+ KK +RL            +N +V++        PKTKEF + ++   L+  +K+ F+  ++ ENV  S+RNI  + +LT   +N+ D+L  E +V T S
Sbjct:    6 VLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDAL--TLAAPKTKEFTKILKDLSLE--KKSLFVTADLDENVALSARNIPGVTVLTANGINVLDLLGHEKVVFTKS 197          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 71/167 (42.51%), Postives = 98/167 (58.68%), Query Frame = 3
Query:  219 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 719
            ++H  + + +  KR+GT +T TRG  RGGG KP+ QK TGRAR GS R+PL  GGG  FGP+PRD+S K+NKK +RL            E  +VV+  D      KTK F+E     GL   +KA  +V +    +  S+RNI  +K++T   LN++DIL A  LV+
Sbjct:   32 ILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKMMVVKNID--LPEIKTKLFVEVAEALGL---EKALVVVKDADNKLLLSARNIPGIKLITADQLNVYDILKARQLVM 193          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOPE (50S ribosomal protein L4 OS=Clostridium perfringens GN=rplD PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 70/189 (37.04%), Postives = 113/189 (59.79%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G+++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E  D  FE PKTKE ++ +  +     +K   +  EV+ENV KS+RNI  + ++    +N++D+L+ +TL++T
Sbjct:   11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIRGVTVMPVNNINVYDLLNCKTLMIT 192          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOP1 (50S ribosomal protein L4 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 70/189 (37.04%), Postives = 113/189 (59.79%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G+++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E  D  FE PKTKE ++ +  +     +K   +  EV+ENV KS+RNI  + ++    +N++D+L+ +TL++T
Sbjct:   11 GQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARNIEGVTVMPVNNINVYDLLNCKTLMIT 192          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_THEAB (50S ribosomal protein L4 OS=Thermosipho africanus (strain TCF52B) GN=rplD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 86/200 (43.00%), Postives = 113/200 (56.50%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSE--NVEKSSRNIGTLKML------TPRT----LNLFDILDAETLVL 719
            GE IG   L  +  A +    V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R P    GGV  GPKPR +  ++NKK KRL             N IVV+E   KF+RPKTK+  E ++  GL+ ++    L  +V E  NV+ S RNI  +K++        RT    LN++DIL+ + LVL
Sbjct:   11 GENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGGGRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKEGNLIVVDEI--KFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVIIADNPGVDRTNIDGLNVYDILNHDKLVL 208          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 72/190 (37.89%), Postives = 109/190 (57.37%), Query Frame = 3
Query:  153 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S+RNI  + ++T   +N+ D+L  + L++T
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHDKLIMT 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_OCEIH (50S ribosomal protein L4 OS=Oceanobacillus iheyensis GN=rplD PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 71/194 (36.60%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            +L   G  +G+  L+      +    V+H A++    + R+GT +   R EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR +S K+ KK +RL            E+ +V+E      + PKTKE +  ++  GL    KA  ++ E  E V +S+ N+  + +LT   LN+ D+L  + L++T
Sbjct:    6 LLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENI--SIDAPKTKEIVNILK--GLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEELNILDLLMHDKLIIT 195          
BLAST of FC925121 vs. ExPASy Swiss-Prot
Match: RL4_CLOBB (50S ribosomal protein L4 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplD PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.776e-28
Identity = 69/189 (36.51%), Postives = 107/189 (56.61%), Query Frame = 3
Query:  156 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            G+++G+  L+      +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GG+VF PKPRD+ + I K  +R+               +V+E     FE PKTK+FIE +  +     +K   +  E +E V KS+RNI  + ++    +N++D+L  E L++T
Sbjct:   11 GKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVNDGQMVVLESL--SFEAPKTKQFIEMLSAFN---AKKTLIITAESNEAVYKSARNIQGVSVIPVNNINVYDLLKFEKLIIT 194          
The following BLAST results are available for this feature:
BLAST of FC925121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_SYNAS1.246e-2836.7950S ribosomal protein L4 OS=Syntrophus aciditrophi... [more]
RL4_ALKMQ1.246e-2836.6050S ribosomal protein L4 OS=Alkaliphilus metallire... [more]
RL4_LYSSC1.627e-2837.7650S ribosomal protein L4 OS=Lysinibacillus sphaeri... [more]
RL4_DESAD1.627e-2842.5150S ribosomal protein L4 OS=Desulfovibrio salexige... [more]
RL4_CLOPE1.627e-2837.0450S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_CLOP11.627e-2837.0450S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_THEAB2.126e-2843.0050S ribosomal protein L4 OS=Thermosipho africanus ... [more]
RL4_BACWK2.126e-2837.8950S ribosomal protein L4 OS=Bacillus weihenstephan... [more]
RL4_OCEIH2.776e-2836.6050S ribosomal protein L4 OS=Oceanobacillus iheyens... [more]
RL4_CLOBB2.776e-2836.5150S ribosomal protein L4 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 TF Citrus clementina cDNA clone KN0AAP8YD13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925121 ID=FC925121; Name=FC925121; organism=Citrus clementina; type=EST; length=729bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAA
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