FC925122

Overview
NameFC925122
Unique NameFC925122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length799
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13595 contig Ccv1_Contig13595:210..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALTI (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhi GN=caiC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            + +SYA  +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S   L++T +Q+     +  +D         +I    P ++ + HF+ L       +    A+  DD   + F+SGTT  PKGVV+TH +L  +           + L + DV + V+P FHI
Sbjct:   36 RQFSYASLNEEINRTANLFYYLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALSV (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            + +SYA  +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S   L++T +Q+     +  +D         +I    P ++ + HF+ L       +    A+  DD   + F+SGTT  PKGVV+TH +L  +           + L + DV + V+P FHI
Sbjct:   36 RQFSYASLNEEINRTANLFYALGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALEP (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            + +SYA  +    +TA    +LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S   L++T  Q+     +  +D         +I    P ++ + HF+ L       +    A+  DD   + F+SGTT  PKGVV+TH +L  +           + L + DV + V+P FHI
Sbjct:   36 RQFSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSVQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALCH (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella choleraesuis GN=caiC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            + +SYA  +    +TA    +LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S   L++T  Q+     +  +D         +I    P ++ + HF+ L       +    A+  DD   + F+SGTT  PKGVV+TH +L  +           + L + DV + V+P FHI
Sbjct:   36 RQFSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSVQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALDC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella dublin (strain CT_02021853) GN=caiC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13
Identity = 55/195 (28.21%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            + +SYA  +    +TA    +LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S   L++T +Q+     +  +D         +I    P ++ + HF+ L       +     +  DD   + F+SGTT  PKGVV+TH +L  +           + L + DV + V+P FHI
Sbjct:   36 RQFSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPVLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13
Identity = 58/203 (28.57%), Postives = 89/203 (43.84%), Query Frame = 2
Query:  218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            C   G     YSY E +    +TA     LGI+ GD + + L NC EF+F + G   IGA+    N      E     + S A L++T +Q+     +  ++         +  ++ P ++ +  FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLVKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVELPADDGVSSFTQLKNQQPVTLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13
Identity = 61/203 (30.05%), Postives = 88/203 (43.35%), Query Frame = 2
Query:  218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            C   G     YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+      + +   T      +T  A P  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.601e-13
Identity = 57/193 (29.53%), Postives = 88/193 (45.60%), Query Frame = 2
Query:  248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+     +  ++         +I +  P ++ +  FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLIDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 65/256 (25.39%), Postives = 104/256 (40.62%), Query Frame = 2
Query:  149 DIPISNHLPLHTYCFQDRLSDDPCLIVGST-----GKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMS------------QYVDRL-----------------PKTDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVA-LPFSSGTTGLPKGVVLTHKSLITS----VAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            DIP  + LPL     Q  L+D        T     GK  ++ +      K AA L   G++ GD + ++L NC + V S+ G    G +    NP YT  E+  Q R +   +IIT+               VD++                 P T K    I  D         + + +   + +    I P+  +A L ++ GTTG PKGV+LTH++++ +     A   D +         + VL ++P FH+
Sbjct:   14 DIP--HELPLPNKTLQSILTDSAARFPDKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPNCPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKIDPEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKE------GAEKVLGIVPFFHV 261          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 60/203 (29.56%), Postives = 87/203 (42.86%), Query Frame = 2
Query:  218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            C   G     YSY E +    +T      LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+      + +   T      +T  A P  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   28 CESSGGVVNRYSYLELNQEINRTTNLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
The following BLAST results are available for this feature:
BLAST of FC925122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CAIC_SALTI3.870e-1328.72Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALSV3.870e-1328.72Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALEP3.870e-1328.72Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALCH3.870e-1328.72Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALDC5.055e-1328.21Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_ESCF35.055e-1328.57Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOSE5.055e-1330.05Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLU6.601e-1329.53Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
LCFA_BACSU8.622e-1325.39Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
CAIC_SHISS8.622e-1329.56Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC02FM1 TF Citrus clementina cDNA clone KN0AAP3YC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925122 ID=FC925122; Name=FC925122; organism=Citrus clementina; type=EST; length=799bp
AAAAAATTTCGACAAAACAAAAAAGGAACTGACGATGATATCAATAGCCA
CTAAAAAACCAGAGCTGTCTCTTGATATCTCTTCAGCAGCACCACCAGCG
CCGTCCAATGAAAAGATAGCCACCCATATTTTCAAATCAAAGCTTCCCGA
TATACCCATCTCCAATCATCTCCCTCTCCATACATATTGTTTCCAGGATC
GTTTATCTGACGATCCATGCTTAATCGTTGGCTCAACTGGCAAAACTTAC
TCTTATGCCGAAACGCACCTCATCTGTCGAAAAACCGCAGCCGGTTTGTC
GAATCTCGGCATCAAAAATGGCGACGTGATCATGATCCTCCTCCAGAACT
GCGCCGAATTCGTCTTCTCGTTCATGGGAGCTTCCATGATCGGTGCAGTC
ACGACGACGGCCAATCCCTTCTACACTTCAGCTGAAATCTTGAAACAGTT
CAGAACCTCTGGTGCCAAATTGATTATCACAATGTCTCAGTACGTCGACA
GGTTGCCGAAGACGGACAAAGATTTCACAGTGATCACGATCGATGCCCCT
CCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAAGCAGATGAGGATCA
AATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGTGGCGTTGCCTTTCT
CTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGCTGACGCACAAGAGC
TTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAGAACCCGAATCTTTA
CTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACCTTTGTTTCACATT
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