FC925122
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALTI (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella typhi GN=caiC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13 Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 + +SYA + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S L++T +Q+ + +D +I P ++ + HF+ L + A+ DD + F+SGTT PKGVV+TH +L + + L + DV + V+P FHI Sbjct: 36 RQFSYASLNEEINRTANLFYYLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALSV (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13 Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 + +SYA + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S L++T +Q+ + +D +I P ++ + HF+ L + A+ DD + F+SGTT PKGVV+TH +L + + L + DV + V+P FHI Sbjct: 36 RQFSYASLNEEINRTANLFYALGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALEP (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13 Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 + +SYA + +TA +LGI+ GD + + L NC EF+F + G + IGA+ N E + S L++T Q+ + +D +I P ++ + HF+ L + A+ DD + F+SGTT PKGVV+TH +L + + L + DV + V+P FHI Sbjct: 36 RQFSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSVQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALCH (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella choleraesuis GN=caiC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13 Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 + +SYA + +TA +LGI+ GD + + L NC EF+F + G + IGA+ N E + S L++T Q+ + +D +I P ++ + HF+ L + A+ DD + F+SGTT PKGVV+TH +L + + L + DV + V+P FHI Sbjct: 36 RQFSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSVQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SALDC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella dublin (strain CT_02021853) GN=caiC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13 Identity = 55/195 (28.21%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 + +SYA + +TA +LGI+ GD + + L NC EF+F + G + IGA+ N E + S L++T +Q+ + +D +I P ++ + HF+ L + + DD + F+SGTT PKGVV+TH +L + + L + DV + V+P FHI Sbjct: 36 RQFSYASLNEEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESAWILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQSATLCYTPVLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQIALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ESCF3 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiC PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13 Identity = 58/203 (28.57%), Postives = 89/203 (43.84%), Query Frame = 2 Query: 218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 C G YSY E + +TA LGI+ GD + + L NC EF+F + G IGA+ N E + S A L++T +Q+ + ++ + ++ P ++ + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLVKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVELPADDGVSSFTQLKNQQPVTLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOSE (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain SE11) GN=caiC PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13 Identity = 61/203 (30.05%), Postives = 88/203 (43.35%), Query Frame = 2 Query: 218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 C G YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + + T +T A P + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.601e-13 Identity = 57/193 (29.53%), Postives = 88/193 (45.60%), Query Frame = 2 Query: 248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD-------FTVITIDAPPENCL-HFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + ++ +I + P ++ + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLIDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13 Identity = 65/256 (25.39%), Postives = 104/256 (40.62%), Query Frame = 2 Query: 149 DIPISNHLPLHTYCFQDRLSDDPCLIVGST-----GKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMS------------QYVDRL-----------------PKTDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVA-LPFSSGTTGLPKGVVLTHKSLITS----VAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 DIP + LPL Q L+D T GK ++ + K AA L G++ GD + ++L NC + V S+ G G + NP YT E+ Q R + +IIT+ VD++ P T K I D + + + + + I P+ +A L ++ GTTG PKGV+LTH++++ + A D + + VL ++P FH+ Sbjct: 14 DIP--HELPLPNKTLQSILTDSAARFPDKTAISFYGKKLTFHDILTDALKLAAFLQCNGLQKGDRVAVMLPNCPQTVISYYGVLFAGGIVVQTNPLYTEHELEYQLRDAQVSVIITLDLLFPKAIKMKTLSIVDQILITSVKDYLPFPKNILYPLTQKQKVHIDFDKTANIHTFASCMKQEKTELLTIPKIDPEHDIAVLQYTGGTTGAPKGVMLTHQNILANTEMCAAWMYDVKE------GAEKVLGIVPFFHV 261
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHISS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella sonnei (strain Ss046) GN=caiC PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13 Identity = 60/203 (29.56%), Postives = 87/203 (42.86%), Query Frame = 2 Query: 218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 C G YSY E + +T LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + + T +T A P + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 28 CESSGGVVNRYSYLELNQEINRTTNLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226 The following BLAST results are available for this feature:
BLAST of FC925122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925122 ID=FC925122; Name=FC925122; organism=Citrus clementina; type=EST; length=799bpback to top |