FC925122
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13 Identity = 60/203 (29.56%), Postives = 88/203 (43.35%), Query Frame = 2 Query: 218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 C G YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + + T +T A P + FT L + + DD + F+SGTT PKGVV+TH +L + L + +V L V+P FHI Sbjct: 28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDEVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13 Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 2 Query: 248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD---------FTVITIDAPPENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + ++ T +++ A + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVSLPA-DDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_CITK8 (Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.126e-12 Identity = 64/199 (32.16%), Postives = 92/199 (46.23%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQ----YVDRLPKTD---KDFTVITIDAPPE-NCLHFTVLSEADEDQIPEV-----AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 + +SYA + +TA GI+ GD + + L NC EF F + G + IGA+ N E + S A+LI+T ++ Y L + D +I +AP E N HF+ L +DQ P + DD + F+SGTT PKGVV+TH +L + + L DV L V+P FHI Sbjct: 36 RQFSYASLNEEINRTANLFLASGIQKGDNVALHLDNCPEFFFCWFGLAKIGAIMVPINARLLREESAWILQNSRAQLIVTSAEFYPMYRQILLEDDTLLNHICLIGENAPVEDNVSHFSQL----KDQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY----SSWQCALREDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL6 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6 GN=caiC PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12 Identity = 61/199 (30.65%), Postives = 88/199 (44.22%), Query Frame = 2 Query: 248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEAD--------EDQIPEV-----AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + ++ DA CL VL D ++Q P + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQE------DASQLRHICLTDMVLPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL5 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiC PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12 Identity = 61/199 (30.65%), Postives = 88/199 (44.22%), Query Frame = 2 Query: 248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEAD--------EDQIPEV-----AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + ++ DA CL VL D ++Q P + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQE------DASQLRHICLTDMVLPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12 Identity = 58/199 (29.15%), Postives = 93/199 (46.73%), Query Frame = 2 Query: 221 LIVGSTGKTYSYAETHLICRKTAAGLSNL--GIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPPENCLHFTVLSEADEDQIP--EVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLI--TSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 L+ S+G +Y E R A L + + +V IL + + ++ IG V + ANP + +E+ Q S + SQ V +L + + +D+ + L+ +D + +V + DP A+ FSSGTTG KGV+LTH++LI T+V+ Q ++P Y V L LPLFH+ Sbjct: 69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTE----FLSWLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVNY---DRVGLFSLPLFHV 260
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12 Identity = 57/186 (30.65%), Postives = 86/186 (46.24%), Query Frame = 2 Query: 242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 +T ++AE ++ A L+ ++ GD ILLQN AE V++ ++G N ++ E L Q SG+ ++T S + K + + V TID ++ EA E+ E ++ D L ++SGTTG PKGV T + S NL +T D L LPLFHI Sbjct: 27 QTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSF----EKKEYEHIVQTIDVD-------ELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSA----LNLGITEQDRWLIALPLFHI 197
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12 Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 2 Query: 218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 C G YSY E + +TA LGI+ G+ + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + + T +T A P + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV + V+P FHI Sbjct: 28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGNKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESEWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHIF8 (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=caiC PE=3 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12 Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 2 Query: 218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 C G YSY E + +TA LGI+ G+ + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + + T +T A P + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV + V+P FHI Sbjct: 28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGNKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESEWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYMTVMPAFHI 226
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECO81 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O81 (strain ED1a) GN=caiC PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12 Identity = 58/193 (30.05%), Postives = 87/193 (45.08%), Query Frame = 2 Query: 248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799 YSY E + +TA LGI+ GD + + L NC EF+F + G + IGA+ N E + S A L++T +Q+ + + ++ +T A P + FT L + + DD + F+SGTT PKGVV+TH +L + L + DV L V+P FHI Sbjct: 38 YSYLELNQEINRTANLFYVLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASELRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226 The following BLAST results are available for this feature:
BLAST of FC925122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925122 ID=FC925122; Name=FC925122; organism=Citrus clementina; type=EST; length=799bpback to top |