FC925122

Overview
NameFC925122
Unique NameFC925122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length799
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13595 contig Ccv1_Contig13595:210..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 60/203 (29.56%), Postives = 88/203 (43.35%), Query Frame = 2
Query:  218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            C   G     YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+      + +   T      +T  A P  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + +V L V+P FHI
Sbjct:   28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDEVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.622e-13
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 2
Query:  248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKD---------FTVITIDAPPENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+     +  ++          T +++ A  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVSLPA-DDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_CITK8 (Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.126e-12
Identity = 64/199 (32.16%), Postives = 92/199 (46.23%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQ----YVDRLPKTD---KDFTVITIDAPPE-NCLHFTVLSEADEDQIPEV-----AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            + +SYA  +    +TA      GI+ GD + + L NC EF F + G + IGA+    N      E     + S A+LI+T ++    Y   L + D       +I  +AP E N  HF+ L    +DQ P        +  DD   + F+SGTT  PKGVV+TH +L  +        +    L   DV L V+P FHI
Sbjct:   36 RQFSYASLNEEINRTANLFLASGIQKGDNVALHLDNCPEFFFCWFGLAKIGAIMVPINARLLREESAWILQNSRAQLIVTSAEFYPMYRQILLEDDTLLNHICLIGENAPVEDNVSHFSQL----KDQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY----SSWQCALREDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL6 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6 GN=caiC PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 61/199 (30.65%), Postives = 88/199 (44.22%), Query Frame = 2
Query:  248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEAD--------EDQIPEV-----AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+     +  ++      DA      CL   VL   D        ++Q P        +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQE------DASQLRHICLTDMVLPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECOL5 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 61/199 (30.65%), Postives = 88/199 (44.22%), Query Frame = 2
Query:  248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEAD--------EDQIPEV-----AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+     +  ++      DA      CL   VL   D        ++Q P        +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   38 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQE------DASQLRHICLTDMVLPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 58/199 (29.15%), Postives = 93/199 (46.73%), Query Frame = 2
Query:  221 LIVGSTGKTYSYAETHLICRKTAAGLSNL--GIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPPENCLHFTVLSEADEDQIP--EVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLI--TSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            L+  S+G   +Y E     R  A  L      + + +V  IL  +  +    ++    IG V + ANP  + +E+  Q   S   +    SQ V +L  +      + +D+        + L+ +D   +   +V +   DP A+ FSSGTTG  KGV+LTH++LI  T+V+ Q   ++P  Y     V L  LPLFH+
Sbjct:   69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTE----FLSWLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVNY---DRVGLFSLPLFHV 260          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 57/186 (30.65%), Postives = 86/186 (46.24%), Query Frame = 2
Query:  242 KTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQYVDRLPKTDKDFTVITIDAPPENCLHFTVLSEADEDQIPEVAIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            +T ++AE     ++ A  L+   ++ GD   ILLQN AE V++     ++G      N   ++ E L Q   SG+  ++T S +     K + +  V TID          ++ EA E+   E  ++ D    L ++SGTTG PKGV  T  +   S          NL +T  D  L  LPLFHI
Sbjct:   27 QTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSF----EKKEYEHIVQTIDVD-------ELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSA----LNLGITEQDRWLIALPLFHI 197          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 2
Query:  218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            C   G     YSY E +    +TA     LGI+ G+ + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+      + +   T      +T  A P  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV + V+P FHI
Sbjct:   28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGNKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESEWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_SHIF8 (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=caiC PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 2
Query:  218 CLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            C   G     YSY E +    +TA     LGI+ G+ + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+      + +   T      +T  A P  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV + V+P FHI
Sbjct:   28 CESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGNKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESEWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYMTVMPAFHI 226          
BLAST of FC925122 vs. ExPASy Swiss-Prot
Match: CAIC_ECO81 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O81 (strain ED1a) GN=caiC PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 58/193 (30.05%), Postives = 87/193 (45.08%), Query Frame = 2
Query:  248 YSYAETHLICRKTAAGLSNLGIKNGDVIMILLQNCAEFVFSFMGASMIGAVTTTANPFYTSAEILKQFRTSGAKLIITMSQY------VDRLPKTDKDFTVITIDAPP--ENCLHFTVLSEADEDQIPEV-AIKPDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLTNGDVVLCVLPLFHI 799
            YSY E +    +TA     LGI+ GD + + L NC EF+F + G + IGA+    N      E     + S A L++T +Q+      + +   ++     +T  A P  +    FT L       +     +  DD   + F+SGTT  PKGVV+TH +L  +             L + DV L V+P FHI
Sbjct:   38 YSYLELNQEINRTANLFYVLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASELRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA----WQCALRDDDVYLTVMPAFHI 226          
The following BLAST results are available for this feature:
BLAST of FC925122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CAIC_SHIDS8.622e-1329.56Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECO278.622e-1329.38Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_CITK81.126e-1232.16Probable crotonobetaine/carnitine-CoA ligase OS=Ci... [more]
CAIC_ECOL61.471e-1230.65Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOL51.471e-1230.65Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
4CLL9_ARATH1.471e-1229.154-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
MENE_BACSU2.509e-1230.652-succinylbenzoate--CoA ligase OS=Bacillus subtili... [more]
CAIC_SHIFL3.276e-1229.06Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_SHIF83.276e-1229.06Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_ECO813.276e-1230.05Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC02FM1 TF Citrus clementina cDNA clone KN0AAP3YC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925122 ID=FC925122; Name=FC925122; organism=Citrus clementina; type=EST; length=799bp
AAAAAATTTCGACAAAACAAAAAAGGAACTGACGATGATATCAATAGCCA
CTAAAAAACCAGAGCTGTCTCTTGATATCTCTTCAGCAGCACCACCAGCG
CCGTCCAATGAAAAGATAGCCACCCATATTTTCAAATCAAAGCTTCCCGA
TATACCCATCTCCAATCATCTCCCTCTCCATACATATTGTTTCCAGGATC
GTTTATCTGACGATCCATGCTTAATCGTTGGCTCAACTGGCAAAACTTAC
TCTTATGCCGAAACGCACCTCATCTGTCGAAAAACCGCAGCCGGTTTGTC
GAATCTCGGCATCAAAAATGGCGACGTGATCATGATCCTCCTCCAGAACT
GCGCCGAATTCGTCTTCTCGTTCATGGGAGCTTCCATGATCGGTGCAGTC
ACGACGACGGCCAATCCCTTCTACACTTCAGCTGAAATCTTGAAACAGTT
CAGAACCTCTGGTGCCAAATTGATTATCACAATGTCTCAGTACGTCGACA
GGTTGCCGAAGACGGACAAAGATTTCACAGTGATCACGATCGATGCCCCT
CCGGAGAATTGCCTGCATTTCACAGTGTTATCGGAAGCAGATGAGGATCA
AATCCCAGAAGTTGCCATCAAGCCCGACGATCCTGTGGCGTTGCCTTTCT
CTTCGGGCACCACGGGATTGCCTAAAGGAGTGGTGCTGACGCACAAGAGC
TTGATCACCAGCGTGGCGCAGCAAGTGGATGGAGAGAACCCGAATCTTTA
CTTGACAAACGGAGACGTTGTGCTGTGCGTTTTACCTTTGTTTCACATT
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