FC925129

Overview
NameFC925129
Unique NameFC925129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   66 REEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAG-EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            ++E+++ F  FD +  G I   EL   ++++G    EE++ +++ D+D D  G I   EF  +     G    + EL +AF + D DKNG IS +++  +   LG   +      M++  D D DG VN +EF  MM
Sbjct:   25 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREMVEEADRDRDGEVNMDEFMRMM 161          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CDPKY_ARATH (Calcium-dependent protein kinase 34 OS=Arabidopsis thaliana GN=CPK34 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 51/151 (33.77%), Postives = 73/151 (48.34%), Query Frame = 3
Query:   60 VSREE---MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKPGPAP 503
            +S EE   ++++F   D +  G I+L EL   L   G+   E E+ ++ME  D D +G I   EF       +    E  L  AF  +D+D +G I+ EEL   L   G+    D    +I  VD D DG +N+EEF +MM     P P P
Sbjct:  366 LSEEEIMGLKEMFKGMDTDNSGTITLEELRQGLAKQGTRLSEYEVQQLMEAADADGNGTIDYGEFIAATMHINRLDREEHLYSAFQHFDKDNSGYITTEELEQALREFGMNDGRD-IKEIISEVDGDNDGRINYEEFVAMMRKG-NPDPNP 514          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CDPKW_ARATH (Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana GN=CPK32 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 3
Query:   87 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVL-NRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 479
            F   D ++ GKI++ EL   L+ +G +  +++L  +M+  D D+DG++   EF  I         +  L++AF  +DQ+ NG I  EEL   L + LG   S +   A+I+ VD D DG +++EEF +MM T
Sbjct:  373 FQIMDTSQRGKINIDELKIGLQKLGHAIPQDDLQILMDAGDIDRDGYLDCDEFIAISVHLRKMGNDEHLKKAFAFFDQNNNGYIEIEELREALSDELG--TSEEVVDAIIRDVDTDKDGRISYEEFVTMMKT 502          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: TNNC2_PONLE (Troponin C, isotype gamma OS=Pontastacus leptodactylus PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 43/138 (31.16%), Postives = 73/138 (52.90%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRT----SSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            ++K F+ FD +  G I+   +  +L+ MG    E+ L +V+ + D D  G +   EF  +           A +AEL+EAF +YD+  +G I+ + L  +L  L  + + D    +I+ VD DG G ++F+EF  MM+
Sbjct:   12 LKKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQQVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELKEAFRIYDKGGDGYITTDVLREILRELDNRLTEDDLDGIIEEVDEDGSGTLDFDEFMEMMS 149          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 49/153 (32.03%), Postives = 73/153 (47.71%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEA------------------ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F  FD N DG I+  EL TV+ S+G +  + +L  +M ++D D DG I   EF  +   + G                       E REAF ++D++ +G I+  EL   +  LG   +      MI   DADGDG ++F EF  +MT
Sbjct:  101 EYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMT 253          

HSP 2 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 49/161 (30.43%), Postives = 76/161 (47.20%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGE-----------------AELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKPGPAP 503
            E ++ F  FD N DG I+  EL T+++S+G    + +L  +M + D D DG I   EF  +   + G                      E RE+F L+D++ +G I+ +EL  V+  LG   +      M+  VD DGDG ++F EF  +M  +     AP
Sbjct:   12 EYRESFRLFDKNGDGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAP 172          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CDPKH_ARATH (Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 3
Query:   60 VSREE---MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKPGPAP 503
            +S EE   ++++F   D +  G I+L EL   L   G+   E E+ ++ME  D D +G I   EF       +    E  L  AF  +D+D +G I+ EEL   L   G+    D    +I  VD D DG +N++EF +MM     P P P
Sbjct:  371 LSEEEIMGLKEMFKGMDTDSSGTITLEELRQGLAKQGTRLSEYEVQQLMEAADADGNGTIDYGEFIAATMHINRLDREEHLYSAFQHFDKDNSGYITMEELEQALREFGMNDGRD-IKEIISEVDGDNDGRINYDEFVAMMRKG-NPDPIP 519          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CDPKJ_ARATH (Calcium-dependent protein kinase 19 OS=Arabidopsis thaliana GN=CPK19 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            ++ +F   D +K G I+  EL + L+ +GS   E E+ +++ED D D +G I   EF +          E  L +AF  +D+D +G IS +EL   +    +   +     +I  VDAD DG++N++EF +MM
Sbjct:  405 LKTMFANMDTDKSGTITYDELKSGLEKLGSRLTETEVKQLLEDADVDGNGTIDYIEFISATMNRFRVEREDNLFKAFQHFDKDNSGFISRQELETAMKEYNMGDDI-MIKEIISEVDADNDGSINYQEFCNMM 536          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CATR4_PARTE (Caltractin ICL1d OS=Paramecium tetraurelia GN=Icl1d PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E+++ F+ FD +    I   EL   + S+G   K + + +++ DLDTD  G I  +EF + +    S    +A++++ F+L+D ++ G+I+ ++L  V   LG          MI   D+DGD  V FE+F ++MT
Sbjct:   41 EIKEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMT 176          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CATR3_PARTE (Caltractin ICL1c OS=Paramecium tetraurelia GN=Icl1c PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E+++ F+ FD +    I   EL   + S+G   K + + +++ DLDTD  G I  +EF + +    S    +A++++ F+L+D ++ G+I+ ++L  V   LG          MI   D+DGD  V FE+F ++MT
Sbjct:   43 EIKEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMT 178          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CATR2_PARTE (Caltractin ICL1b OS=Paramecium tetraurelia GN=Icl1b PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E+++ F+ FD +    I   EL   + S+G   K + + +++ DLDTD  G I  +EF + +    S    +A++++ F+L+D ++ G+I+ ++L  V   LG          MI   D+DGD  V FE+F ++MT
Sbjct:   42 EIKEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMT 177          
The following BLAST results are available for this feature:
BLAST of FC925129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
CML20_ARATH5.989e-1431.39Probable calcium-binding protein CML20 OS=Arabidop... [more]
CDPKY_ARATH5.989e-1433.77Calcium-dependent protein kinase 34 OS=Arabidopsis... [more]
CDPKW_ARATH5.989e-1434.85Calcium-dependent protein kinase 32 OS=Arabidopsis... [more]
TNNC2_PONLE7.822e-1431.16Troponin C, isotype gamma OS=Pontastacus leptodact... [more]
CML12_ARATH1.334e-1332.03Calmodulin-like protein 12 OS=Arabidopsis thaliana... [more]
CDPKH_ARATH1.334e-1333.11Calcium-dependent protein kinase 17 OS=Arabidopsis... [more]
CDPKJ_ARATH1.743e-1332.33Calcium-dependent protein kinase 19 OS=Arabidopsis... [more]
CATR4_PARTE1.743e-1330.88Caltractin ICL1d OS=Paramecium tetraurelia GN=Icl1... [more]
CATR3_PARTE1.743e-1330.88Caltractin ICL1c OS=Paramecium tetraurelia GN=Icl1... [more]
CATR2_PARTE1.743e-1330.88Caltractin ICL1b OS=Paramecium tetraurelia GN=Icl1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YD17FM1 TF Citrus clementina cDNA clone KN0AAP8YD17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925129 ID=FC925129; Name=FC925129; organism=Citrus clementina; type=EST; length=686bp
GAAAAAGAAAAGCATTGGCAGCAACAACGGAGGCAGATTCGAATAGGAAA
CAGCTAATAGTGAGCCGGGAGGAGATGCAGAAGATCTTCAACCAGTTCGA
CGCGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTGA
AATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGAG
GATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCGGAGTTCGAAAC
GATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAGG
CGTTTGATCTCTACGATCAGGACAAGAACGGCTTGATTTCGGCGGAGGAG
TTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGATG
TGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAATT
TTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGCG
CCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATATT
AACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGTC
TACTACTTTTAATGTTAATAAACTCTGATGCATTTTCAATGGTTTAAAAA
TTGGCTTACGATATTAAAAAAAAAAAAAAAAAAAAA
back to top