FC925129

Overview
NameFC925129
Unique NameFC925129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 3
Query:   66 REEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA-GEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEF-RSMMTTSL 485
            ++E+++ F+ FD +  G I   EL   ++++G   K+EE+ +++ ++D D  G I   EF T+     G      E+ +AF L+D D +G I+ ++L  V   LG   + +    MI   D + D  ++ +EF R M  TSL
Sbjct:   27 KQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSL 168          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CABP1_RAT (Calcium-binding protein 1 OS=Rattus norvegicus GN=Cabp1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 3
Query:   69 EEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-----ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            EE+++ F +FD +KDG I+  +L   +++MG    E EL+ + + ++ +  G +   +F       +   ++   G  ELR+AF  +D + +G IS  EL   + + LG +        +I+ VD +GDG V+FEEF  MM+
Sbjct:  156 EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 297          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CABP1_HUMAN (Calcium-binding protein 1 OS=Homo sapiens GN=CABP1 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 3
Query:   69 EEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-----ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            EE+++ F +FD +KDG I+  +L   +++MG    E EL+ + + ++ +  G +   +F       +   ++   G  ELR+AF  +D + +G IS  EL   + + LG +        +I+ VD +GDG V+FEEF  MM+
Sbjct:  228 EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 369          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 3
Query:   63 SREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 464
            S     ++F++ D NKDGK+ + EL   LK+MG +  +    +++E  DT+KDG +   EF            E +++ AF   D++K+G I + E+   L  LGI  S+D    ++K +D+DG   V++ E+R
Sbjct:   20 SHTRYAELFHKLDVNKDGKVDILELQEGLKAMGMAVGKGAEEKIVEAGDTNKDGHLDFGEFMRYLEEH-----EKKMKIAFTSLDKNKDGKIESSEVMNSLKTLGINISLDHAEKILKSMDSDGTLTVDWNEWR 148          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 50/153 (32.68%), Postives = 83/153 (54.25%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMED-LDTDKDGFISLSEFETICRTSS----GAAG-------EAELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSLKP 491
            + ++F+ FD N DG I++ EL+  L  +G      +L   ++  +  DK G +   +F  + +T      G  G       E++L EAF+++D+D +G ISA EL  VL +LG+     ++    MI  VD++ DG V+F EF++MM T + P
Sbjct:   29 LHRVFDLFDKNNDGFITVEELSQALSRLGLDADFSDLKSTVDSFIKPDKTG-LRFDDFAALHKTLDESFFGGEGSCCDGSPESDLEEAFNVFDEDGDGFISAVELQKVLKKLGLPEAGEIEQVEKMIVSVDSNHDGRVDFFEFKNMMQTVVVP 180          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CATR6_PARTE (Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1f PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E+++ F+ FD +    I   EL   + S+G   K + + +++ DLDTD  G I  +EF + +    S    +A++++ F+L+D ++ G I+ ++L  V   LG          MI   D+DGD  V FE+F ++MT
Sbjct:   43 EIKEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGFITLKDLRKVAKELGETMDDSELQEMIDRADSDGDTQVTFEDFYNIMT 178          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 3
Query:   21 ATTEADSNRKQLIVSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI----CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            A T+A S   + +++  E +  F+ FD +  G IS  EL TV++ +G +   EEL  ++E++D D  G I   EF  +     +       E EL E F ++D++ +G I  EE   +L   G   S +    ++   D + DG ++F+E+  MM
Sbjct:    4 AQTDARSFLSEEMIA--EFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   63 SREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 464
            S+   +++F++ D NKDGK+ + EL   LK+MG    +    +++   DT+KDG +   EF            E +++ AF   D++K+G I + E+   L  LGIK S+D    ++K +D+DG   V++ E+R
Sbjct:   20 SQSRYEELFHKLDVNKDGKVDILELQEGLKAMGMEVGKGAEEKIVAAGDTNKDGHLDFGEFIRYLEEH-----EKKMKIAFTSLDKNKDGKIESAEIMNSLKVLGIKISLDHADKILKSMDSDGTLTVDWNEWR 148          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CDPKN_ARATH (Calcium-dependent protein kinase 23 OS=Arabidopsis thaliana GN=CPK23 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 50/157 (31.85%), Postives = 77/157 (49.04%), Query Frame = 3
Query:    3 KRKALAATTEADSNRKQLIVSREEMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            K K LA    A S  ++ I   + ++ +F   D N+ G I+  +L T L  + S   E E+ +++E  D D +G I   EF +          +  + +AF   D+DKNG I+ +EL   +   G+         +I  VD D DG +NFEEFR+MM
Sbjct:  353 KLKKLALKVSAVSLSEEEI---KGLKTLFANMDTNRSGTITYEQLQTGLSRLRSRLSETEVQQLVEASDVDGNGTIDYYEFISATMHRYKLHHDEHVHKAFQHLDKDKNGHITRDELESAMKEYGMGDEA-SIKEVISEVDTDNDGKINFEEFRAMM 505          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: SM20_SCHMA (20 kDa calcium-binding protein OS=Schistosoma mansoni GN=SM20 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   84 IFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC--RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 479
            +F +FD     KIS T+L    +++  + K + L    + +D D  GFI  + F  IC  +       E +LR+AF + D++K G I  E+L  +L  LG   + +    MI+  D DG G V+F+EF  +MT+
Sbjct:   21 VFKRFDKRGQEKISTTDLGPAFRALNLTVKPDTLKEWADQVDDDATGFIDFNGF-LICYGKKLQEDQDERDLRDAFRVLDKNKRGEIDVEDLRWILKGLGDDLTEEEIDDMIRDTDTDGSGFVDFDEFYKLMTS 153          
The following BLAST results are available for this feature:
BLAST of FC925129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
CATR_CHLRE2.972e-1330.28Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CABP1_RAT2.972e-1330.99Calcium-binding protein 1 OS=Rattus norvegicus GN=... [more]
CABP1_HUMAN2.972e-1330.99Calcium-binding protein 1 OS=Homo sapiens GN=CABP1... [more]
SCM1A_XENLA3.882e-1332.09Calcium-binding mitochondrial carrier protein SCaM... [more]
CML43_ARATH3.882e-1332.68Probable calcium-binding protein CML43 OS=Arabidop... [more]
CATR6_PARTE3.882e-1330.88Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1... [more]
TNNC2_ANGAN5.070e-1329.68Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
SCM1B_XENLA5.070e-1332.09Calcium-binding mitochondrial carrier protein SCaM... [more]
CDPKN_ARATH5.070e-1331.85Calcium-dependent protein kinase 23 OS=Arabidopsis... [more]
SM20_SCHMA6.622e-1332.8420 kDa calcium-binding protein OS=Schistosoma mans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD17FM1 TF Citrus clementina cDNA clone KN0AAP8YD17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925129 ID=FC925129; Name=FC925129; organism=Citrus clementina; type=EST; length=686bp
GAAAAAGAAAAGCATTGGCAGCAACAACGGAGGCAGATTCGAATAGGAAA
CAGCTAATAGTGAGCCGGGAGGAGATGCAGAAGATCTTCAACCAGTTCGA
CGCGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTGA
AATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGAG
GATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCGGAGTTCGAAAC
GATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAGG
CGTTTGATCTCTACGATCAGGACAAGAACGGCTTGATTTCGGCGGAGGAG
TTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGATG
TGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAATT
TTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGCG
CCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATATT
AACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGTC
TACTACTTTTAATGTTAATAAACTCTGATGCATTTTCAATGGTTTAAAAA
TTGGCTTACGATATTAAAAAAAAAAAAAAAAAAAAA
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