FC925129

Overview
NameFC925129
Unique NameFC925129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10226 contig Ccv1_Contig10226:52..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 464
            +Q +F + D NKDG I + +LA  LK +G    E EL ++++  D D+DG +   EF    R       E +LR  F   D+  +G I A+E+   L  LG+  S      ++K +D +G   +++ E+R
Sbjct:   61 LQILFQELDVNKDGAICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFDEFVHYLRDH-----EKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWR 185          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  108 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  108 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  108 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFR 464
            +Q +F + D NKDG I + +LA  LK +G    E EL ++++  D D+DG +   EF    R       E +LR  F   D+  +G I A+E+   L  LG+  S      ++K +D +G   +++ E+R
Sbjct:   60 LQILFQELDVNKDGGICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFEEFVHYLRDH-----EKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEWR 184          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  282 EAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 479
            E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   14 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTS 79          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CML27_ORYSJ (Probable calcium-binding protein CML27 OS=Oryza sativa subsp. japonica GN=CML27 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA----------------GEAELREAFDLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            ++++F+ FD N DG+I+L E+A+ L ++G       L   +          +   +FE + R    A                  E +++EAF ++D+D +G ISA EL  VL +LG+    ++     MI  VD D DG V+F EF+ MM
Sbjct:   32 LRRVFDLFDRNGDGEITLDEMASALDALGLGADRAGLEATVGGYIPAGAAGLRFGDFEALHRALGDALFGPVEEEEPGKQGEDDDEGDMKEAFRVFDEDGDGFISAAELQAVLKKLGLPEARNLATVQEMICNVDRDCDGRVDFGEFKCMM 182          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEA---ELREAFDLYDQDKNGLISAEELNLVLNR-LGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 473
            E +  F+ FD +  G IS  EL T++K +G S   EEL ++++++D D  G I   EF E + R    +  E    ELR AF + D++ +G I  +E   + +   G   + D  +  +   D + DG  ++EE++ ++
Sbjct:   18 EFKMAFDMFDEDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: POLC3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSG 272
            E ++IF +FDAN DGKIS +EL   LK++G S   EE+ R+M ++DTD DGFIS  EF    R + G
Sbjct:   10 EHERIFKRFDANGDGKISSSELGETLKTLG-SVTPEEIQRMMAEIDTDGDGFISFEEFTVFARANRG 75          
The following BLAST results are available for this feature:
BLAST of FC925129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
SCMC2_XENLA3.633e-1131.54Calcium-binding mitochondrial carrier protein SCaM... [more]
TNNC1_RABIT4.745e-1128.57Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_MOUSE4.745e-1128.57Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_HUMAN4.745e-1128.57Troponin C, slow skeletal and cardiac muscles OS=H... [more]
SCMC2_XENTR4.745e-1131.54Calcium-binding mitochondrial carrier protein SCaM... [more]
CALM_STRPU4.745e-1151.52Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CML27_ORYSJ6.198e-1130.46Probable calcium-binding protein CML27 OS=Oryza sa... [more]
TNNC_BRALA8.094e-1129.50Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]
POLC3_OLEEU8.094e-1150.75Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD17FM1 TF Citrus clementina cDNA clone KN0AAP8YD17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925129 ID=FC925129; Name=FC925129; organism=Citrus clementina; type=EST; length=686bp
GAAAAAGAAAAGCATTGGCAGCAACAACGGAGGCAGATTCGAATAGGAAA
CAGCTAATAGTGAGCCGGGAGGAGATGCAGAAGATCTTCAACCAGTTCGA
CGCGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTGA
AATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGAG
GATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCGGAGTTCGAAAC
GATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAGG
CGTTTGATCTCTACGATCAGGACAAGAACGGCTTGATTTCGGCGGAGGAG
TTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGATG
TGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAATT
TTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGCG
CCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATATT
AACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGTC
TACTACTTTTAATGTTAATAAACTCTGATGCATTTTCAATGGTTTAAAAA
TTGGCTTACGATATTAAAAAAAAAAAAAAAAAAAAA
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