FC925129

Overview
NameFC925129
Unique NameFC925129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10226 contig Ccv1_Contig10226:52..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CML33_ARATH (Probable calcium-binding protein CML33 OS=Arabidopsis thaliana GN=CML33 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   75 MQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC---RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNF 452
            +  IF +FD +KDGKIS  E    + ++  S   E+LV +   LDT+ DG +  ++F +       SSG   E EL++AF LYD + +G ISA EL++V+ RLG KC+V+ CV M++ +D DGDG + F
Sbjct:    6 LSDIFERFDTSKDGKISWEEFRDAIHALSPSIPSEKLVEMFIQLDTNGDGQVDAAKFASCMDQTAQSSGGDVEKELKDAFKLYDINCDGKISANELHVVMTRLGEKCTVESCVGMVQAIDVDGDGYIRF 134          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of FC925129 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   72 EMQKIFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 476
            E ++ F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
The following BLAST results are available for this feature:
BLAST of FC925129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
CML33_ARATH2.682e-2241.86Probable calcium-binding protein CML33 OS=Arabidop... [more]
CALM_XENLA2.682e-2242.65Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TORCA2.682e-2242.65Calmodulin OS=Torpedo californica PE=1 SV=2[more]
CALM_SHEEP2.682e-2242.65Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3[more]
CALM_RAT2.682e-2242.65Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2[more]
CALM_RABIT2.682e-2242.65Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S... [more]
CALM_PONAB2.682e-2242.65Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3[more]
CALM_PERFV2.682e-2242.65Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3[more]
CALM_ONCSP2.682e-2242.65Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2[more]
CALM_MOUSE2.682e-2242.65Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD17FM1 TF Citrus clementina cDNA clone KN0AAP8YD17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925129 ID=FC925129; Name=FC925129; organism=Citrus clementina; type=EST; length=686bp
GAAAAAGAAAAGCATTGGCAGCAACAACGGAGGCAGATTCGAATAGGAAA
CAGCTAATAGTGAGCCGGGAGGAGATGCAGAAGATCTTCAACCAGTTCGA
CGCGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTGA
AATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGAG
GATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCGGAGTTCGAAAC
GATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAGG
CGTTTGATCTCTACGATCAGGACAAGAACGGCTTGATTTCGGCGGAGGAG
TTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGATG
TGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAATT
TTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGCG
CCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATATT
AACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGTC
TACTACTTTTAATGTTAATAAACTCTGATGCATTTTCAATGGTTTAAAAA
TTGGCTTACGATATTAAAAAAAAAAAAAAAAAAAAA
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