FC925135

Overview
NameFC925135
Unique NameFC925135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:42..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.586e-72
Identity = 132/234 (56.41%), Postives = 157/234 (67.09%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKGWNN 765
            GG   + G     G  D G   D G L  II +  F+ LL +RND RC A GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYCY+++++             + G QY GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ A R+PGYG+ TN INGGIE G+G  N
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPN 296          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.071e-72
Identity = 125/206 (60.68%), Postives = 156/206 (75.73%), Query Frame = 1
Query:  151 KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKGWN 762
            KIISR MF+ +L +RN+  C A+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYC++++ +  S+           PG+ YYGRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  A RLPGYG+ TN +NGG+E GKG N
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPN 209          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 4.615e-72
Identity = 124/208 (59.62%), Postives = 152/208 (73.08%), Query Frame = 1
Query:  139 GELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G+L  IIS   F+D+L +RND  C ARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +  SD              +YYGRGP+QL+WN NY  CG A+GVDLLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  A RLPGYG+ TN INGG+E G+G
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRG 291          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.027e-72
Identity = 126/225 (56.00%), Postives = 157/225 (69.78%), Query Frame = 1
Query:   88 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G  + CG    G     G+L  IISR  F+D+L +RND  C ARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +  S+               YYGRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  A R+PGYG+ TN INGG+E G+G
Sbjct:   55 GCQSQCGGTPPG---PTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRG 276          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 1.028e-71
Identity = 137/236 (58.05%), Postives = 161/236 (68.22%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKGWN 762
            G  +Q  GSG   G          G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTGG  W  AP G YAWGYCY R+++  S            PG QY+GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  A R  GYG+ TN INGG+E GKGWN
Sbjct:   35 GCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWN 260          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.028e-71
Identity = 133/233 (57.08%), Postives = 162/233 (69.53%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TN INGG+E G G
Sbjct:   43 GDTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHG 274          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.754e-71
Identity = 131/233 (56.22%), Postives = 162/233 (69.53%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G + + CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TN INGG+E G G
Sbjct:   47 GNTNEYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHG 278          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.664e-71
Identity = 133/243 (54.73%), Postives = 163/243 (67.08%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHG--------TDG---GELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHG-SDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G +   CG G    +  +G G        T G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+  +  S           PGQ YYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A+RLPGYG+ TN INGG+E G G
Sbjct:   48 GNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHG 290          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.137e-70
Identity = 131/233 (56.22%), Postives = 160/233 (68.67%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TN INGG+E G G
Sbjct:   43 GNTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHG 274          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.307e-70
Identity = 130/233 (55.79%), Postives = 160/233 (68.67%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIESGKG 756
            G +   CG G    +   G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A+R+PG+G+ TN INGG+E G G
Sbjct:   43 GNTNDYCGPGNCQSQCPGG---SPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHG 272          
The following BLAST results are available for this feature:
BLAST of FC925135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI6_POPTR1.586e-7256.41Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_CARPA2.071e-7260.68Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH4.615e-7259.62Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_BRANA6.027e-7256.00Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI2_GOSHI1.028e-7158.05Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_SOLTU1.028e-7157.08Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC1.754e-7156.22Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_TOBAC6.664e-7154.73Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_SOLTU1.137e-7056.22Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU3.307e-7055.79Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD22FM1 TF Citrus clementina cDNA clone KN0AAP8YD22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925135 ID=FC925135; Name=FC925135; organism=Citrus clementina; type=EST; length=780bp
CTTGCTTTCAAAATTAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGT
TTTATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGCTG
TGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGC
AAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGA
TGAACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGG
CAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGT
AAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGG
GGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATA
TTAGGCAAGTTAGCCATGGGTCCGACTACTGTTATCCTTACTGTCCATGT
CCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAA
TTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACA
ATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATC
TGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCAT
TATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCAGCCGGCTTC
CGGGATACGGTCTAACCACAAATAAAATCAACGGTGGAATTGAAAGTGGC
AAAGGTTGGAATAACCTTTGTAGCTAACCG
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