FC925135

Overview
NameFC925135
Unique NameFC925135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:42..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 69/222 (31.08%), Postives = 102/222 (45.95%), Query Frame = 1
Query:   88 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIE 744
            G G   G    G G+ G  +  +++   F  +   +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +E
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALE 247          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.241e-25
Identity = 72/231 (31.17%), Postives = 101/231 (43.72%), Query Frame = 1
Query:   64 QGGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIE 744
            Q G     G  A  G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                CYI +++  +           P Q    YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +E
Sbjct:   56 QSGPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALE 252          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.528e-25
Identity = 77/227 (33.92%), Postives = 109/227 (48.02%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIE 744
            G S   CG G   G   D   G     +  I+++E F D +  +    C  + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET           +A  YC   Q    +             +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T   INGG E
Sbjct:   19 GNSYDYCGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQE 217          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.219e-25
Identity = 74/226 (32.74%), Postives = 101/226 (44.69%), Query Frame = 1
Query:   88 GSGAVCGERDTGHGTDGGELG---KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIE 744
            G G   G    G G  GG  G   + +  E F + +  +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                CYI +++  S           P Q    YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +E
Sbjct:   64 GGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALE 255          
BLAST of FC925135 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.274e-21
Identity = 73/231 (31.60%), Postives = 100/231 (43.29%), Query Frame = 1
Query:   67 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS-DXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNKINGGIE 744
            G     CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++   S D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +E
Sbjct:   41 GTGEDYCGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALE 237          
The following BLAST results are available for this feature:
BLAST of FC925135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIA_MAIZE1.900e-2531.08Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ3.241e-2531.17Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA5.528e-2533.92Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ7.219e-2532.74Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU1.274e-2131.60Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD22FM1 TF Citrus clementina cDNA clone KN0AAP8YD22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925135 ID=FC925135; Name=FC925135; organism=Citrus clementina; type=EST; length=780bp
CTTGCTTTCAAAATTAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGT
TTTATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGCTG
TGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGC
AAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGA
TGAACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGG
CAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGT
AAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGG
GGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATA
TTAGGCAAGTTAGCCATGGGTCCGACTACTGTTATCCTTACTGTCCATGT
CCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAA
TTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACA
ATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATC
TGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCAT
TATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCAGCCGGCTTC
CGGGATACGGTCTAACCACAAATAAAATCAACGGTGGAATTGAAAGTGGC
AAAGGTTGGAATAACCTTTGTAGCTAACCG
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