FC925138

Overview
NameFC925138
Unique NameFC925138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1948 contig Ccv1_Contig1948:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.218e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  384 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+   ++K LWI+F ++M I+LK  L V   +T+DGRGA+VH+ NGG
Sbjct:   18 SCCSDNPIDSCWRGDSNWGQNRMKLADCAVGFGSSTMGGKGGDFYTVTSA-DDNPVNPTPGTLRYGATREKTLWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGG 126          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.218e-32
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 3
Query:  384 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG-CITIQFV 734
            SC + NPID CWR D NW +NR +LADC +GFG +A+GG+ G FY VT   DDDPVNP PGTLR+   +++ LWI+F +++ I+L   L +   +T+DGRGA VHI NGG C+ ++ V
Sbjct:   18 SCFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVTS-SDDDPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHIGNGGPCLFMRTV 134          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.490e-32
Identity = 67/134 (50.00%), Postives = 84/134 (62.69%), Query Frame = 3
Query:  312 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            P   A  VE    ++ E R+    +C   N ID CWRC  +W  NR+ LADC  GF +   GG+ G  Y VT  +DDD  NPK GTLR A  Q++PLWI+FKR+MVI L QEL+VNS +T+DGRG  V+I N G
Sbjct:   22 PVRSAEDVEEFLPSANETRR-SLKACEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG 154          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.364e-32
Identity = 67/134 (50.00%), Postives = 85/134 (63.43%), Query Frame = 3
Query:  312 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            P   A  ++    ++ E R L   +CGT N ID CWR   +W +NRK LADC  GF +  IGG+DG  Y VT   DDD  NPK GTLR    Q++PLWI+F RDMVI+L +EL +N+ +T+DGRGA V I N G
Sbjct:   22 PVRSAEDLQQILPSANETRSLT--TCGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAG 153          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.086e-31
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  390 GTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            G  N ID CWR   +W +NRK LADC  GFG+  +GG+DG  Y VT   DDD  NPK GTLR    Q++PLWI+F+RDMVI+L +E++VNS +T+DGRGA V I N G
Sbjct:   45 GAYNIIDGCWRGKADWAENRKALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIINAG 152          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.306e-30
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 3
Query:  351 NSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            N T R   G   C   N ID CWRC  +W +NR+ L +C  GFG+   GG+ G  Y+VT  +DDD VNPK GTLR    QD+PLWI+F+RDM+I L+QE++V S +T+DGRGA V +  GG
Sbjct:   36 NDTRRSLQG---CEAHNIIDKCWRCKPDWAENRQALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGG 153          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.711e-30
Identity = 61/110 (55.45%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  384 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            +C   N ID CWR   +W  NR+ LADC  GF +   GG+ G  Y VT   DDD  NPK GTLR A  Q++PLWI+FK DMVI L QEL+VNS +T+DGRG  V I NGG
Sbjct:   44 ACEALNIIDKCWRGKADWENNRQALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEIINGG 153          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  399 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            NPID CWR D NW +NR +LADC +GFG + +GG+ G  Y VT   +D+PVNP PGTLR+   ++K LWI+F ++M I+L+  L V  ++T+DGRGA VH+ NGG
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSS-EDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHLGNGG 105          
The following BLAST results are available for this feature:
BLAST of FC925138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MPAJ1_JUNVI3.218e-3255.45Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
MPAC1_CHAOB3.218e-3252.54Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
MPA12_AMBAR5.490e-3250.00Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR9.364e-3250.00Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
MPA11_AMBAR2.086e-3156.48Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPAA2_AMBAR2.306e-3051.24Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA13_AMBAR6.711e-3055.45Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPAC1_CUPAR1.953e-2953.33Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YC12FM1 TF Citrus clementina cDNA clone KN0AAP3YC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925138 ID=FC925138; Name=FC925138; organism=Citrus clementina; type=EST; length=735bp
ATTCTTCTCTCTTTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCCTTT
CTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAATCAA
AGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTTTTG
CTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAACGAG
CAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAACTC
AACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAACATG
CAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACCCGC
AACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGGTAA
TCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACCGCA
AGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGTGGC
CGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCCTGT
TAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGCCTC
TCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAACTG
ATTGTCAATAGCTTCCAGACCCTTGATGGTCGTGGGGCGAATGTGCACAT
TGCTAATGGAGGTTGCATCACTATCCAATTTGTGA
back to top