FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925143_ssr47 microsatellite FC925143_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14602 contig Ccv1_Contig14602:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIG 518
            K RHYRGVR+RPWGK+AAEIRDP K G RVWLGT+ TA EAA AYD AA++MRG KA+LNFP  IG
Sbjct:   95 KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 160          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIG 518
            K RHYRGVR+RPWGK+AAEIRDP K G RVWLGT+ TA EAA AYD AA++MRG KA+LNFP  IG
Sbjct:   99 KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.094e-22
Identity = 68/153 (44.44%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  234 SINVRIPPPTTSIFRLKDEDKDLEV------------ADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYE-----ENEEFERK---VAVKKEETV 632
            ++NV   P   S   +K E ++ E+            A+  + RHYRGVRRRPWGK+AAEIRDP K G RVWLGT+ T  EAA AYD AA++MRG KA LNFP  IG   L+  E  +V   ++   E     EN   +R+   VA +K E V
Sbjct:   60 ALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG---LNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEKSEAV 209          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI 515
            K +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFPL +
Sbjct:  113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRV 177          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  327 RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEV 545
            + YRGVRRRPWGKYAAEIRD  + G RVWLGTF TA EAA AYD AAF+MRG KA+LNFP EI   S+  D++
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASVSVDKL 129          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 53/89 (59.55%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEEN 587
            K RHYRGVR+RPWGK+AAEIRDP K G RVWLGT+ +A EAA AY  AAF+MRG KA+LNFP  IG      +E + V    KR+  E+
Sbjct:  103 KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG-----LNEPEPVRVTVKRRLSES 186          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  309 ADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            + D K+  +RGVRRRPWGK+AAEIRDP++ G R+WLGTF TA EAA+AYD AAF +RG  AILNFP E
Sbjct:   12 SQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            E  YRGVR+RPWGKYAAEIRD  + G RVWLGTFNTA +AA+AYD AAF MRG++AILNFP E
Sbjct:   11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            YRGVRRRPWGKYAAEIRD  K G RVWLGTF+TA EAA+AYD AA+ MRG+ AILNFP E
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            YRGVRRRPWGKYAAEIRD  K G RVWLGTF+TA +AA+AYD AA+ MRG+ AILNFP E
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHE 79          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF2_TOBAC8.373e-2374.24Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY8.373e-2374.24Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_TOBAC1.094e-2244.44Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF101_ARATH3.182e-2272.31Ethylene-responsive transcription factor 2 OS=Arab... [more]
PTI5_SOLLC4.156e-2268.49Pathogenesis-related genes transcriptional activat... [more]
ERF1_SOLLC5.427e-2259.55Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF98_ARATH2.694e-2167.65Ethylene-responsive transcription factor ERF098 OS... [more]
ERF95_ARATH4.595e-2174.60Ethylene-responsive transcription factor ERF095 OS... [more]
ERF96_ARATH7.837e-2178.33Ethylene-responsive transcription factor ERF096 OS... [more]
ERF97_ARATH1.337e-2076.67Ethylene-responsive transcription factor 14 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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