FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  306 VADDYKE-RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            V+DD K    YRGVR R WGK+ +EIR+P KK +R+WLGT+ TA  AA+A+D AA  ++G    LNFP
Sbjct:   61 VSDDNKNPTSYRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFP 127          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            Y+G+R R WGK+ AEIR+PNK+ +R+WLG++ T   AA+AYD A F +RG  A LNFP
Sbjct:   28 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFP 84          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            YRGVR+R  GK+ +E+R+PNKK TR+WLGTF TA  AA+A+D AA  +RGR A LNF
Sbjct:   48 YRGVRQRNSGKWVSEVREPNKK-TRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  327 RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPL 509
            + +RGVR+R WG + AEIR P  K  R+WLGTF TA EAA+AYD AA  M GR A  NFPL
Sbjct:    5 KKFRGVRQRHWGSWVAEIRHPLLK-RRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 3
Query:  327 RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGNGIFSVP 716
            R +RGVR+R WG + +EIR P  K  RVWLGTF TA  AA+AYD AA  M G+ A  NFP+   E    SD V+ V+         +E    K+    ++       L   T SS  G W    G  + P
Sbjct:    5 RKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPVVKSEEG--SDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGVWQKRAGSKTSP 131          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            YRGVR+R WGK+ AEIR+PN+ G R+WLG+F TA+EAA AYD AA  M G  A +NF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNR-GRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            YRGVR+R WGK+ AEIR+PN+ G R+WLG+F TA+EAA AYD AA  M G  A +NF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNR-GRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            YRGVR+R  GK+  E+R+PNKK TR+WLGTF TA  AA+A+D AA  +RGR A LNF
Sbjct:   51 YRGVRQRNSGKWVCELREPNKK-TRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  300 LEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVG 647
            +E +    +  Y+GVR+R WGK+ +EIR PN +  R+WLG+++T  +AA+A+D A + +RG  A  NFP          D    +  G+     E  E   + A   E+  SGG G
Sbjct:    1 MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSR-ERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFP----------DNPPVISGGRNLSRSEIREAAARFANSAEDDSSGGAG 105          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF70_ARATH (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNK----KGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPL 509
            E+ YRGVR+RPWGK+ AEIR        +  R+WLGTFNTA EAA AYDNA+ K+ G  A  NF L
Sbjct:   76 EKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTNFGL 141          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF35_ARATH7.855e-1354.41Ethylene-responsive transcription factor ERF035 OS... [more]
ERF08_ARATH7.855e-1356.90Ethylene-responsive transcription factor ERF008 OS... [more]
DRE1B_ARATH7.855e-1363.16Dehydration-responsive element-binding protein 1B ... [more]
WIN1_ARATH1.026e-1260.66Ethylene-responsive transcription factor WIN1 OS=A... [more]
SHN2_ARATH1.026e-1238.46Ethylene-responsive transcription factor SHINE 2 O... [more]
DRE2A_ORYSJ1.340e-1263.16Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI1.340e-1263.16Dehydration-responsive element-binding protein 2A ... [more]
DRE1C_ARATH1.340e-1263.16Dehydration-responsive element-binding protein 1C ... [more]
ERF17_ARATH2.286e-1234.48Ethylene-responsive transcription factor ERF017 OS... [more]
ERF70_ARATH2.985e-1257.58Ethylene-responsive transcription factor ERF070 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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