FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGG 641
            K   YRGVRRRPWGK+AAEIRDP K G RVWLGT+ T  +AA AYD AAF++RG KA LNFP  IG    +   ++     ++R  E +   +     K+E  V  G
Sbjct:   88 KGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRP----RRRSPEPSVSDQLTSEQKRESHVDDG 190          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  207 STLSQRKPSS-INVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI 515
            STLS+   S  ++     P  S    +     L+   + ++R+YRGVR+RPWGK+AAEIRDPNK   RVWLGTF+TA EAA AYD AAF+ RG KA LNFP  I
Sbjct:   27 STLSESDVSDFVSELTGQPIPSSIDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHI 129          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  306 VADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVD-CGKKRKYEENEEFERKVAVKK 620
            V+    E+ YRGVRRRPWGK+AAEIRD  + G RVWLGTF +A EAA AYD AAF MRG  AILNF  E  + SL   +    D C      +      R++  KK
Sbjct:   73 VSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKK 178          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 3
Query:  312 DDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            D  KE HYRGVR+RPWG+YAAEIRDP KK +RVWLGTF+TA EAAKAYD AA + RG KA  NFP
Sbjct:   20 DGVKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPL 509
            KE HYRGVR+RPWG+YAAEIRDP KK +RVWLGTF+TA EAAKAYD AA + RG KA  NFPL
Sbjct:   23 KEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPL 84          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 57/110 (51.82%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERK---VAVKKEETVSGG 641
            KE H+RGVR+RPWG+YAAEIRDP KK TRVWLGTF+TA EAA+AYD AA + RG KA  NFPL  GE +  +D  +      +       E  R+    A  +E  V GG
Sbjct:   29 KEVHFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLP-GESTTVNDGGENDSYVNRTTVTTAREMTRQRFPFACHRERKVVGG 136          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 49/76 (64.47%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  279 LKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            L   D+     D  + RHYRGVR+RPWGK+AAEIRDP KK  RVWLGTF TA EAA AYD AA K +G KA LNFP
Sbjct:   21 LDKSDQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  315 DYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP--LEIGEIS--LDSDEVQQVD 557
            D + RHYRGVR+RPWGK+AAEIRDP KK  RVWLGTF TA  AA AYD AA K +G KA LNFP  +++G  S    S+++ Q++
Sbjct:   84 DLRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSNQIPQME 167          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 54/104 (51.92%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  195 QKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            Q +S   +Q +P   N + P P         +D+ L      ++RHYRGVR+RPWGK+AAEIRDP +K  RVWLGTF TA  AA AYDNAA K +G KA LNFP
Sbjct:   55 QSSSHDNNQHQPVVYNQQDPNPPAP----PTQDQGL-----LRKRHYRGVRQRPWGKWAAEIRDP-QKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDE 542
            +ER YRGVR+RPWGK+AAEIRD  + G RVWLGTF+ A EAA AYD AAF  +G  A LNFP+E+   SL   E
Sbjct:   82 EERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKME 155          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF99_ARATH2.978e-2048.60Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF112_ARATH2.978e-2052.88Ethylene-responsive transcription factor ERF112 OS... [more]
ERF92_ARATH5.080e-2050.00Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF4_TOBAC5.080e-2073.85Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY5.080e-2076.19Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF80_ARATH6.635e-2051.82Ethylene-responsive transcription factor 9 OS=Arab... [more]
EF113_ARATH8.665e-2064.47Ethylene-responsive transcription factor ERF113 OS... [more]
EF114_ARATH1.478e-1958.82Ethylene-responsive transcription factor ERF114 OS... [more]
EF115_ARATH1.930e-1951.92Ethylene-responsive transcription factor ERF115 OS... [more]
ERF93_ARATH3.293e-1962.16Ethylene-responsive transcription factor 15 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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