FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDS 536
            KE  YRGVRRRPWG+YAAEIRDP KK  RVWLG+FNT  EAA+AYD+AA + RG KA  NFPL IG   + S
Sbjct:   49 KEVRYRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL-IGYYGISS 118          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 58/106 (54.72%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  309 ADDYKERH---YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE-IGEISLDSDEVQQVDCGKKRKYEENEEFERKVAV 614
            A D K++    Y+G+RRRPWG++AAEIRDP K G RVWLGTFNTA EAA+AYD  A ++RG KA LNFP E  G+    +  VQQV        EEN E +  VAV
Sbjct:   14 ASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIK-GVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQV--------EENHEADLDVAV 110          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  303 EVADDYKERH--YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            E  D  +ER   YRG+R+RPWGK+AAEIRDP+K G RVWLGTF TA EAA+AYD AA K+RGRKA LNFP
Sbjct:   38 EERDGKRERKNLYRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 54/117 (46.15%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  207 STLSQRKPSSINVRIPPPTTSIFRLKDEDKDLE-VADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQV 554
            S+ S+ + +S N+  P PT           +    + D   R YRGVR+RPWGK+AAEIRDP K   RVWLGTF+ A  AA+AYD AA + RG KA LNFP  +  +   S E Q V
Sbjct:  142 SSTSKVREASSNMSGPGPTYEYTTTATASSETSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPV 257          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            KE  YRGVR+RPWG+YAAEIRDP KK TRVWLGTF+TA EAA+AYD AA   RG KA  NFP
Sbjct:   21 KEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 54/135 (40.00%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  135 SFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDY--------KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI 515
            + +S L Q   A +  +     +SS+ +  K   + +   P  +S  R+      +E +           K+R YRGVR+RPWGK+AAEIRDP++   RVWLGTF+TA  AA+AYD AA + RG KA LNFP ++
Sbjct:    3 AMVSALTQVVSARSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDV 136          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIG 518
            + + YRGVR+RPWGK+AAEIRDP+K  TRVWLGTF TA  AA+AYD AA + RG KA LNFP  +G
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  258 PTTSIFRLKDEDKDLEVADDYKERH-----YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            PT  +  +K+E    E A +  +R      YRG+R+RPWGK+AAEIRDP +KG RVWLGTFNTA EAA AYD AA ++RG KA LNFP
Sbjct:   50 PTNQV-NVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 59/130 (45.38%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTG---FWDDGNG 701
            K+  YRGVR+RPWGK+AAEIRDP K+ TRVWLGTF TA +AA+AYD AA   RG +A LNFP  +   S  S  V   D G K     +       +V+ E+   GG   G      W       D GNG
Sbjct:  132 KKNGYRGVRQRPWGKFAAEIRDP-KRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPF-VDYTSSVSSPVAADDIGAKA--SASASVSATDSVEAEQWNGGG---GDCNMEEWMNMMMMMDFGNG 254          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            KE  YRGVR+RPWG++AAEIRDP KK +RVWLGTF++AV+AA+AYD AA  +RG KA  NFP++
Sbjct:   23 KEPRYRGVRKRPWGRFAAEIRDPLKK-SRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF77_ARATH3.293e-1968.06Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF73_ARATH3.293e-1954.72Ethylene-responsive transcription factor ERF073 OS... [more]
ERF71_ARATH3.293e-1970.00Ethylene-responsive transcription factor ERF071 OS... [more]
ABR1_ARATH5.617e-1946.15Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF78_ARATH1.251e-1874.19Ethylene-responsive transcription factor 4 OS=Arab... [more]
EF110_ARATH1.634e-1840.00Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH3.641e-1866.67Ethylene-responsive transcription factor RAP2-6 OS... [more]
RAP23_ARATH3.641e-1857.95Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF109_ARATH3.641e-1845.38Ethylene-responsive transcription factor ERF109 OS... [more]
ERF83_ARATH4.755e-1867.19Ethylene-responsive transcription factor 7 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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