FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925143_ssr47 microsatellite FC925143_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14602 contig Ccv1_Contig14602:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  291 DKDLEVADDYKERH-YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            D D E + + K ++ YRG+R+RPWGK+AAEIRDP ++G R+WLGTF TA EAA+AYD AA ++RG KA +NFP E
Sbjct:  110 DGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE 183          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            ++  YRG+R+RPWGK+AAEIRDP +KG+R WLGTF+TA EAA+AYD AA ++RG KA +NFP E
Sbjct:  124 RKNQYRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLD 533
            +E HYRGVR+RPWG+YAAEIRDP KK TRVWLGTF+T  EAA AYD AA  +RG KA  NFP     +SLD
Sbjct:    8 REVHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP---SPLSLD 74          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEV 545
            KE  YRGVR+RPWG+YAAEIRDP KK TRVWLGTF+TA +AA+AYD AA   RG KA  NF + +G     S  V
Sbjct:   27 KEIRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSSTV 100          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRG-RKAILNFPLE 512
            K R YRGVR+RPWGK+AAEIRD  + G RVWLGTF TA EAA AYD AA ++RG +KA  NF LE
Sbjct:  106 KTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            ++  +RG+R+RPWGK+AAEIRDP +KG RVWLGTFN+A EAA+AYD  A ++RG+KA +NFP
Sbjct:  116 RKNQFRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            KE  +RGVR+RPWG++AAEIRDP KK  RVWLGTF++A EAA+AYD+AA  +RG KA  NFP++
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKKA-RVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPID 86          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  288 EDKDLEVADDY----KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF-----PLEIGEISLDSDEVQQVDCGKKR-----------KYEENEEFERKV------------AVKKEETVSGGV 644
            E++ + V DD     K + YRGVR+RPWGK+AAEIRDP+ + TR+WLGTF TA EAA AYD AA  ++G KA+ NF     P  +    +D   V   D G+             ++  NEE E ++             +K+EE  S G+
Sbjct:   86 EEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPV----IDLQTVSACDYGRDSRQSLHSPTSVLRFNVNEETEHEIEAIELSPERKSTVIKEEEESSAGL 231          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPL 509
            KE  +RGVR+RPWG++AAEIRDP KK TRVWLGTF++A +AA+AYD AA  +RG KA  NFPL
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  327 RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            R +RGVR+RPWGK+AAEIRDP+++  RVWLGTF+TA EAA  YDNAA ++RG  A LNFP
Sbjct:   85 RKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RA212_ARATH8.110e-1860.00Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH1.383e-1765.63Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF81_ARATH1.383e-1767.61Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF79_ARATH1.383e-1762.67Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF91_ARATH1.807e-1767.69Ethylene-responsive transcription factor ERF091 OS... [more]
ERF1_ORYSJ2.360e-1764.52Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF82_ARATH5.257e-1765.63Ethylene-responsive transcription factor 3 OS=Arab... [more]
CRF6_ARATH5.257e-1738.41Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF3_TOBAC8.967e-1768.25Ethylene-responsive transcription factor 3 OS=Nico... [more]
CRF1_ARATH1.171e-1668.33Ethylene-responsive transcription factor CRF1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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