FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 58/179 (32.40%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   57 HQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE-IGEISLDSDEVQQVDCGKKRKYEENE 590
            H +     L+R+ + +L D    DS             S DE        +T+ + K     + + P T SI   K      + +D  + + +RGVR+RPWG++AAEIRDP + G RVWLGT++T  EAA  YD AA K++G  A+ NFP+    E+++   E +           EN+
Sbjct:   26 HNEKSNSELQRVVRIILTDADATDS-------------SDDEG------RNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPD-SDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSEND 183          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRGVR+RPWG+YAAEIRDP KK +RVWLGTF+T  EAA+AYD  A + RG KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            ++ YRGVR+RPWGK+AAEIRDP ++  R+WLGTF TA EAA  YDNAA K+RG  A+ NF ++
Sbjct:  114 QKKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            E+ +RGVR+RPWGK+AAEIRDP K+  R+WLGT+NTA EAA  YDNAA ++RG  A+ NF
Sbjct:  119 EKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 64/164 (39.02%), Postives = 81/164 (49.39%), Query Frame = 3
Query:  105 LNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGE----ISLDSDEVQQVDCGKKRKYEE 584
            LN LTP   +   + L  +               ST+S   P+ I ++   P+TS      + K+L          YRGVR+R WGK+ AEIR P K  TR+WLGTF TA +AA AYD AAF++RG  A LNFP  I E    +    D   Q  C   RK EE
Sbjct:   25 LNQLTPYQIHQIQNQLNHRR--------------STISNLSPNRIRMKNLTPSTS------KTKNL----------YRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHEDMNPLPSSVDTKLQAICKSLRKTEE 157          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 56/133 (42.11%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDE---VQQVDC-------GKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSW---TGFWDD 692
            YRGVR+R WGK+ AEIR P  + TR+WLGTF+TA EAA AYD  AFK+RG  A LNFP    E+ L+  E   V Q  C          R+ E++      V    EET         + P  W   +  WDD
Sbjct:  187 YRGVRQRHWGKWVAEIRKPRNR-TRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP----ELFLNKQEPTPVHQKQCETGTTSEDSSRRGEDDSSTALAVGGVSEETGWAEAWFNAI-PEEWGPGSPLWDD 313          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI 515
            E+ Y+G+R R WGK+ AEIR+PNK+ +R+WLG++ TAV AA+AYD A F +RG  A LNFP E+
Sbjct:   33 EKRYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 53/133 (39.85%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP---LEIGEISLDSDEVQQVDCGKKRKYE------ENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWD-DGNG 701
            YRGVR+R WGK+ AEIR P  + TR+WLGTF+TA EAA AYD AAFK+RG  A LNFP    + G    D+ E   +      K E      +N+  + +   +K    +      P  P   +G  + DG+G
Sbjct:  143 YRGVRQRHWGKWVAEIRLPRNR-TRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAILAEPKNQPGKTERTSRKRAKAAASSAEQPSAPQQHSGSGESDGSG 274          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  117 TPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERH-----------------YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            TP D +  I  +   +P +TD        SS+  +    S+  R+      I R  DED + + A   K++                  YRGVR+RPWGK+AAEIRDP+ + TR+WLGTF TA EAA  YD AA +++G  A  NF
Sbjct:   19 TPFDGFPKIVKIIVTDPCATD--------SSSDEENDNKSVAPRVKRYVDEI-RFCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  285 DEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEI----SLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGNGIFSVPPLSPCFGQL 743
            +E+K   V D  K   YRGVR+R WGK+ +EIR+P KK +R+WLGTF +   AA+A+D AA  ++G  AILNFP   G      SL   ++ QV   K    E ++ F    ++    + S    L  L  SS TG  + G  I  +P L   +  L
Sbjct:   20 EEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKK-SRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDI-QVAALKAAHMETSQSFSSSSSLTFSSSQSSS-SLESLVSSSATGSEELGE-IVELPSLGSSYDGL 172          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
PTI6_SOLLC1.998e-1632.40Pathogenesis-related genes transcriptional activat... [more]
ERF76_ARATH1.998e-1670.69Ethylene-responsive transcription factor 11 OS=Ara... [more]
CRF4_ARATH5.812e-1661.90Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF2_ARATH5.812e-1665.00Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF56_ARATH7.591e-1639.02Ethylene-responsive transcription factor ERF056 OS... [more]
ERF53_ARATH7.591e-1642.11Ethylene-responsive transcription factor ERF053 OS... [more]
RAP29_ARATH9.914e-1657.81Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF55_ARATH9.914e-1639.85Ethylene-responsive transcription factor ERF055 OS... [more]
CRF5_ARATH2.209e-1537.67Ethylene-responsive transcription factor CRF5 OS=A... [more]
TINY_ARATH2.885e-1537.58Ethylene-responsive transcription factor TINY OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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