FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925143_ssr47 microsatellite FC925143_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14602 contig Ccv1_Contig14602:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 60/181 (33.15%), Postives = 81/181 (44.75%), Query Frame = 3
Query:  111 DLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI-----------------------GEISLDSDEVQQVDCGKKRKYEE 584
            D T       IS  PQQ      +Q + Q  S TL+          + P    +  +  E     +A     + YRGVR+R WGK+ AEIR P  +  R+WLGTF+TA EAA AYD  AFK+RG  A LNFP                           E++L+S E+  +D G++    E
Sbjct:   85 DPTMQGQKQMISFSPQQQ--QQQQQYMAQYWSDTLN----------LSPRGRMMMMMSQEAVQPYIAT----KLYRGVRQRQWGKWVAEIRKPRSRA-RLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEHFVNKESELHDSNSSDQKEPETPQPSEVNLESKELPVIDVGREEGMAE 248          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  327 RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPL 509
            + +RGVR+RPWGK+AAEIRDP ++  R+WLGTF TA EAA  YDNAA ++RG  A+ NF +
Sbjct:  123 KKFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 53/113 (46.90%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  180 EQILVQKTSSTLSQRKPSSINVRIPPPTTSIF----RLKDEDKDLEVAD-DYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            E+ L   T ST S   P+ +      PT S      +L  +D  + +A        YRGVRRRPWG+YAAEIRDP  K  R WLGTF+TA +AA AYD+AA   RG KA  NF
Sbjct:    2 EKALRNFTESTHSP-DPNPLTKFFTEPTASPVSRNRKLSSKDTTVTIAGAGSSTTRYRGVRRRPWGRYAAEIRDPMSKERR-WLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  279 LKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            + D   D E  ++ K+  YRGVR R WGK+ +EIR+P KK +R+WLGTF TA  A +A+D AA  ++G  AILNFP
Sbjct:    1 MADSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKK-SRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFP 75          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  117 TPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            T +   + +++      +S+D+      TS+ LS+ +        PP   +  + + +      +   +   YRGVR R WGK+ +EIR P KK TR+WLGTF TA  AA+A+D AA  ++G  A+LNFP
Sbjct:   14 TRVQKMTSLNSSASPTSSSSDQSDATTTTSTHLSEEEA-------PPRNNNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKK-TRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFP 135          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILN 500
            +RGVR+R WGK+ AEIR+PN+ GTR+WLGTFNT+VEAA AYD AA K+ G +A LN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNR-GTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 42/70 (60.00%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  294 KDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            K  +  DD     + GVRRRPWG+YAAEIRDP  K  R WLGTF+TA EAA AYD AA  MRG +A  NF
Sbjct:    7 KSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            YRGVRRRPWG+YAAEIRDP  K  R WLGTF+TA EAA AYD AA  MRG KA  NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSKERR-WLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            ++ YRGVR+R WGK+ AEIR P K  TR+WLGTF+TA EAA AYD AA+K+RG  A LNFP
Sbjct:   90 QKLYRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.442e-14
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  228 PSSINVRIPP-----PTTSIFRLKDEDKDLEVADDYKERH--YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEI 524
            P  + +  PP     PT +   +K      +       RH  Y GVR+R WGK+ +EIR+P KK +R+WLG+F     AAKAYD AAF ++GRKA LNFP EI ++
Sbjct:    3 PQRMKLSSPPVTNNEPTATASAVKSCGGGGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKK-SRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDL 107          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF54_ARATH3.767e-1533.15Ethylene-responsive transcription factor ERF054 OS... [more]
CRF3_ARATH3.767e-1560.66Ethylene-responsive transcription factor CRF3 OS=A... [more]
ESR1_ARATH1.096e-1446.90Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF43_ARATH1.096e-1451.32Ethylene-responsive transcription factor ERF043 OS... [more]
ERF36_ARATH1.096e-1434.62Ethylene-responsive transcription factor ERF036 OS... [more]
DRE2G_ARATH1.096e-1467.86Dehydration-responsive element-binding protein 2G ... [more]
LEP_ARATH1.432e-1460.00Ethylene-responsive transcription factor LEP OS=Ar... [more]
ESR2_ARATH1.432e-1473.68Ethylene-responsive transcription factor ESR2 OS=A... [more]
ERF60_ARATH1.870e-1465.57Ethylene-responsive transcription factor ERF060 OS... [more]
ERF23_ARATH2.442e-1443.40Ethylene-responsive transcription factor ERF023 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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