FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRGVR+R WGK+ AEIR P  + TR+WLGTF+TA EAA AYD AA+K+RG  A LNFP
Sbjct:  152 YRGVRQRHWGKWVAEIRLPRNR-TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 208          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRGVR+R WGK+ AEIR P  + TR+WLGTF+TA EAA AYD AA+K+RG  A LNFP
Sbjct:   83 YRGVRQRHWGKWVAEIRLPRNR-TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  114 LTPMDSYSFISNLPQQNPAS-----------TDEQILVQKTSSTLSQ---RKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            LTP    +FI N  Q  P S           T  QIL  +T   L Q   R+ +  ++    PT+         K ++VA     + YRGVR+R WGK+ AEIR P K  TR+WLGTF TA EAA AYD AA K+RG  A LNFP
Sbjct:   37 LTP----NFIPNNDQVLPVSNQTGPIGLNQLTPTQILQIQTELHLRQNQSRRRAGSHLLTAKPTSM--------KKIDVATK-PVKLYRGVRQRQWGKWVAEIRLP-KNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFP 167          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  192 VQKTSSTLSQRKPSSINVRIPPP--TTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            +Q +SS  SQR     N+R P P  T    + K+E K +      K+ ++RGVR R WGK+ +EIR+P KK +R+WLGTF+T   AA+A+D AA  ++G  A LNFP
Sbjct:    1 MQDSSSHESQR-----NLRSPVPEKTGKSSKTKNEQKGVS-----KQPNFRGVRMRQWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFP 96          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 56/164 (34.15%), Postives = 77/164 (46.95%), Query Frame = 3
Query:  168 ASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF-PLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGP 656
            AS  +   ++  + TL+   P S +      +TS  + K + K      D  +  YRGVR+R WGK+ AEIR+P K+ TR WLGTF TA +AA+AYD AA  + G +A LN  P     +S  S  V              +     +      TV GG   GP
Sbjct:    5 ASQHQHNHLEDNNQTLTHNNPQSDSTT--DSSTSSAQRKRKGKG---GPDNSKFRYRGVRQRSWGKWVAEIREPRKR-TRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSSPSSVSSSSSSVSAAS-SPSTSSSSTQTLRPLLPRPAAATVGGGANFGP 161          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRG+RRR WGK+ AEIR+PNK+ +R+WLG++ T + AA+AYD A F +RG  A LNFP
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKR-SRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFP 87          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 3
Query:  306 VADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            VA   +++ Y+G+R R WGK+ AEIR+PNK+ +R+WLG+++T   AA+AYD A F +RG  A LNFP
Sbjct:   21 VATRKRDKPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFP 86          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  276 RLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            R KD+D +  V+   K  ++RGVR R WGK+ +EIR+P KK +R+WLGTF+TA  AA+A+D AA  ++G  A LNFP
Sbjct:   29 RAKDDDDEKVVS---KHPNFRGVRMRQWGKWVSEIREPKKK-SRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFP 101          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            + GVRRRPWG+YAAEIRDP  K  R WLGTF+TA EAA AYD AA  MRG +A  NF
Sbjct:   36 FLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAHEAALAYDRAALSMRGTQARTNF 91          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP-LEIGEISLDSD 539
            ++R Y+G+R R WGK+ AEIR+PNK+ +R+WLG+++T   AA+AYD A F +RG  A LNFP L  GE   D D
Sbjct:   17 RDRPYKGIRMRKWGKWVAEIREPNKR-SRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDED 89          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RAP24_ARATH3.189e-1467.24Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF58_ARATH3.189e-1467.24Ethylene-responsive transcription factor ERF058 OS... [more]
ERF57_ARATH3.189e-1442.76Ethylene-responsive transcription factor ERF057 OS... [more]
ERF39_ARATH3.189e-1444.86Ethylene-responsive transcription factor ERF039 OS... [more]
ABI4_ARATH4.165e-1434.15Ethylene-responsive transcription factor ABI4 OS=A... [more]
RAP21_ARATH5.440e-1460.34Ethylene-responsive transcription factor RAP2-1 OS... [more]
RA210_ARATH5.440e-1452.24Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF38_ARATH5.440e-1451.95Ethylene-responsive transcription factor ERF038 OS... [more]
ERF86_ARATH7.105e-1468.42Ethylene-responsive transcription factor ERF086 OS... [more]
ERF10_ARATH7.105e-1452.70Ethylene-responsive transcription factor ERF010 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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