FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 57/159 (35.85%), Postives = 82/159 (51.57%), Query Frame = 3
Query:   57 HQDHEALTLERISQYL----LNDLTPMDS-----YSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            H DH       ++ +L    L +L+  +S     + +I N   Q+  + +E + + KT +      PS         TT    +K + + + V      + YRGVR+R WGK+ AEIR P  + TRVWLGTF TA +AA AYD AA+ +RG  A LNFP
Sbjct:  136 HPDHHPSKPPNLTLFLKEPKLLELSQSESNMSPYHKYIPNSFYQSDQNRNEWVEINKTLTNY----PSKGFGNYWLSTTKTQPMKSKTRKV-VQTTTPTKLYRGVRQRHWGKWVAEIRLPRNR-TRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            K++ YRGVR+R WGK+ AEIR P  +  RVWLGT++TA  AA AYD AA+K+RG  A LNFP
Sbjct:  132 KKKLYRGVRQRHWGKWVAEIRLPQNR-MRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP 192          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRG+RRR WGK+ +EIR+P KK TR+WLG++ TA  AA AYD AA  +RGR   LNFP
Sbjct:   20 YRGIRRRKWGKWVSEIREPGKK-TRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFP 76          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 3
Query:  321 KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            +ER ++G+R R WGK+ AEIR+PNK+ +R+WLG+++T   AA+AYD A F +RG  A LNFP
Sbjct:   17 RERPFKGIRMRKWGKWVAEIREPNKR-SRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFP 77          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIG 518
            +RGVR+R WGK+ AEIR+P K GTR+WLGTF TA +AA AYD AA  M G  A LNFP  +G
Sbjct:   78 FRGVRQRIWGKWVAEIREP-KIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFPQSVG 138          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 41/76 (53.95%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  276 RLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            R K +    +     +E  Y GVRRRPWG+YAAEIR+P  K  R WLGTF+TA EAA AYD AA  +RG  A  NF
Sbjct:   20 RQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTK-ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  108 NDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDED-------KDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEI 524
            + +T   S S        + +ST+   + +  S   + R+  S          S+  ++D+D       K  +     K   YRGVR R WGK+ +EIR+P KK +R+WLGT+ TA  AA+A+D AA  ++G  A LNFP   GE+
Sbjct:   28 SSITASASLSSSPTTSSSSSSSTNSNFIEEDNSKRKASRRSLS----------SLVSVEDDDDQNGGGGKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGEL 162          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            Y+GVR+R WGK+ AEIR+PN+ G R+WLGTF+T+ EAA AYD+AA K+ G +A LN P
Sbjct:   42 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLP 98          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            +RGVR+R WGK+ AEIR+PN+ G+R+WLGTF TA EAA AYD AA  M G  A LNFP
Sbjct:   79 FRGVRQRIWGKWVAEIREPNR-GSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP 135          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  282 KDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            + E K     D  K   YRGVR R WGK+ +EIR+P KK +R+WLGTF T   AA+A+D AA  ++G  AILNFP
Sbjct:   34 QSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFP 107          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF62_ARATH9.279e-1435.85Ethylene-responsive transcription factor ERF062 OS... [more]
ERF61_ARATH9.279e-1461.29Ethylene-responsive transcription factor ERF061 OS... [more]
ERF22_ARATH9.279e-1462.07Ethylene-responsive transcription factor ERF022 OS... [more]
ERF11_ARATH9.279e-1454.84Ethylene-responsive transcription factor ERF011 OS... [more]
DRE2B_ARATH9.279e-1462.90Dehydration-responsive element-binding protein 2B ... [more]
ERF87_ARATH2.067e-1353.95Ethylene-responsive transcription factor ERF087 OS... [more]
ERF34_ARATH2.067e-1333.56Ethylene-responsive transcription factor ERF034 OS... [more]
DRE2D_ARATH2.067e-1362.07Dehydration-responsive element-binding protein 2D ... [more]
DRE2A_ARATH2.067e-1365.52Dehydration-responsive element-binding protein 2A ... [more]
DREB3_ARATH2.700e-1352.00Dehydration-responsive element-binding protein 3 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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