FC925143

Overview
NameFC925143
Unique NameFC925143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925143_ssr47 microsatellite FC925143_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14602 contig Ccv1_Contig14602:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRGVR+R WGK+ AEIR+P KK  R+WLG+F TA EAA AYD AA K+ G  A LN P
Sbjct:   28 YRGVRQRTWGKWVAEIREP-KKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLP 84          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKK 620
            + GVR+RPWG+++AEIRD   +  R WLGTF+TA EAA+AYD AA ++RG KA  NF +      L   E+ Q     + + ++ ++ ++KV+V+K
Sbjct:  116 FMGVRKRPWGRWSAEIRDRIGR-CRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNFVIP----PLFPKEIAQAQEDNRMRQKQKKKKKKKVSVRK 206          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGE-----ISLDSDEVQ 548
            YRG R R WGK+ +EIR+P KK +R+WLGTF TA  AA+A+D AA  ++G  AILNFP E+ +     +SL   ++Q
Sbjct:   26 YRGARMRSWGKWVSEIREPRKK-SRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFP-ELADFLPRPVSLSQQDIQ 100          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRGVR+R WGK+ +EIR+P  K  R+WLG+F T   AA AYD AAF  RGR+A LNFP
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTKN-RIWLGSFETPEMAATAYDVAAFHFRGREARLNFP 80          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 503
            YRGVRRR  GK+  E+R+PNKK TR+WLGTF TA  AA+A+D AA  +RGR A LNF
Sbjct:   51 YRGVRRRNSGKWVCEVREPNKK-TRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 106          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF69_ARATH (Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  324 ERHYRGVRRRPWGKYAAEIRDPNKKGT--RVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVD 557
            ++ +RGVR+RPWGK+AAEIR    KG   R+WLGTF TA EAA AYDNAA ++ G  A  NF    G   +DS  V++ D
Sbjct:   72 KKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIGPDAPTNF----GRPDVDSAVVKKQD 147          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 506
            YRGVR R WGK+ +EIR+P KK +R+WLGTF+T   AA+A+D AA  ++G  A+LNFP
Sbjct:   43 YRGVRMRTWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFP 99          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  312 DDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 512
            +D K + YRGVR+R WGK+ +EIR P K G R+WLG+++   +AA+AYD A F +RG K + NFP +
Sbjct:   20 EDRKFKCYRGVRKRSWGKWVSEIRVP-KTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTD 85          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 55/159 (34.59%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI--------------GEISLDSDE-----------------VQQVDCGKKRKYEEN-----EEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGNG 701
            YRGVR+R WGK+ AEIR+P+  G R+WLGTF+++ EAA AYD AA  + G+ A LN P EI              G ++  SDE                 V+  DC  +    ++     EE + K  V++E  ++ G G+G  +       W  GNG
Sbjct:   72 YRGVRQRRWGKWVAEIREPDG-GARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLP-EITNRSSSTAATATVSGSVTAFSDESEVCAREDTNASSGFGQVKLEDCSDEYVLLDSSQCIKEELKGKEEVREEHNLAVGFGIGQDSKRETLDAWLMGNG 228          
BLAST of FC925143 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  333 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP-----LEIGEISLDSDEVQQVDCGKKRKYEENEEFE-RKVAVKKEETVSGGVGLGPLTPSSWTG--FWDDGNGIFSVP 716
            YRGVR+R  GK+  E+R+PNKK +R+WLGTF T   AA+A+D AA  +RGR A LNF      L I E +    E+Q+        ++     E  K A + EE    GV  G        G  F+ D   +  +P
Sbjct:   54 YRGVRQRNSGKWVCEVREPNKK-SRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPK-EIQKAASEAAMAFQNETTTEGSKTAAEAEEAAGEGVREGERRAEEQNGGVFYMDDEALLGMP 187          
The following BLAST results are available for this feature:
BLAST of FC925143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
DRE2F_ARATH2.700e-1363.79Dehydration-responsive element-binding protein 2F ... [more]
ERF84_ARATH3.526e-1342.71Ethylene-responsive transcription factor ERF084 OS... [more]
ERF42_ARATH3.526e-1350.65Ethylene-responsive transcription factor ERF042 OS... [more]
ERF21_ARATH3.526e-1362.07Ethylene-responsive transcription factor ERF021 OS... [more]
DRE1A_ARATH3.526e-1364.91Dehydration-responsive element-binding protein 1A ... [more]
ERF69_ARATH4.605e-1352.50Ethylene-responsive transcription factor ERF069 OS... [more]
ERF37_ARATH4.605e-1358.62Ethylene-responsive transcription factor ERF037 OS... [more]
ERF15_ARATH6.015e-1350.75Ethylene-responsive transcription factor ERF015 OS... [more]
DRE2C_ARATH6.015e-1334.59Dehydration-responsive element-binding protein 2C ... [more]
DRE1D_ARATH6.015e-1337.50Dehydration-responsive element-binding protein 1D ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC17FM1 TF Citrus clementina cDNA clone KN0AAP3YC17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925143 ID=FC925143; Name=FC925143; organism=Citrus clementina; type=EST; length=757bp
TGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCAGCTGGTCAT
CATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCATAAGCCAGTA
CCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCATCTCCAACC
TCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTAGTACAAAAG
ACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAACGTAAGAAT
ACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAGATAAAGATT
TGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGAGTGAGGAGA
CGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAATAAAAAGGG
GACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAGCTGCGAAAG
CTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCCATACTGAAT
TTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGAAGTGCAGCA
AGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGGAGTTTGAGA
GAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGTGGTGTTGGACTA
GGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATGATGGAAATGG
GATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAGTTGGGCGTTT
GCTAAAT
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