FC925153

Overview
NameFC925153
Unique NameFC925153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 3.902e-61
Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN I ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + +K
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + +K
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + +K
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + +K
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + +K
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + +K
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVF NKQDLPNAMNAAEITDKLGLHSLRQR+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
The following BLAST results are available for this feature:
BLAST of FC925153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
ARF1_SOLTU3.902e-6193.39ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF3_TAKRU1.813e-5888.43ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.813e-5888.43ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.813e-5888.43ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.813e-5888.43ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.813e-5888.43ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.813e-5888.43ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_RAT1.813e-5888.43ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.813e-5888.43ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.813e-5888.43ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE06FM1 TF Citrus clementina cDNA clone KN0AAP8YE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925153 ID=FC925153; Name=FC925153; organism=Citrus clementina; type=EST; length=602bp
GACGGTTGAATACTTAACATTAGCTTCACGGTTTGGGATGTCGGAGGTCA
GGACAAGATCCGTCCATTGTGGAGGCACTATTTTCAGAACACTCAGGGCC
TCATTTTTGTGGTGGATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGG
GATGAGTTGCACCGAATGTTGAATGAGGATGAATTGAGGGATGCTGTTCT
GCTTGTATTTGCTAACAAACAAGATCTTCCGAATGCAATGAATGCTGCAG
AAATAACTGACAAGCTCGGTCTTCATTCTCTTCGCCAGCGACACTGGTAT
ATCCAGAGCACATGTGCAACCTCTGGAGAGGGTCTTTACGAAGGGTTGGA
TTGGCTTTCCAACAACATCGCTAGCAAGGCTTGAATGAAGCAGTGAAGAT
TCTGGCTCCTCTTTTAGATTTCGTTATGGCTTATACCTATTCTAGGTATT
CTGAAGAAGATAGTTTCCCTTTTGTTCAGTCACTTCTATAACAGCATAAT
GTTTGTTGAAAATCTACTGCTATGTGAAGTATGGATTTTGTATAATCCTA
CATAACTATTAAGATGATGATGCATCTGTTCGGAAAAAAAAAAAAAAAAA
AA
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