FC925153

Overview
NameFC925153
Unique NameFC925153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.367e-58
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGL SLRQR WYIQ+TCAT+G+GL+EGLDWLS  +  K+
Sbjct:   63 NIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS  + +++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+R+ EAR+EL RML+EDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLRQR WYIQ+ CATSG+GLYEGL+WLS N+  K+
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
[Close]
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 369
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 177
The following BLAST results are available for this feature:
BLAST of FC925153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
ARF1_XENLA2.367e-5888.43ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT2.367e-5888.43ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE2.367e-5888.43ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA2.367e-5888.43ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN2.367e-5888.43ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN2.367e-5888.43ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF_NEUCR5.274e-5886.07ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF_DUGJA5.274e-5886.89ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF_CRYNE5.274e-5885.25ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF1_LOCMI5.274e-5888.98ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE06FM1 TF Citrus clementina cDNA clone KN0AAP8YE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925153 ID=FC925153; Name=FC925153; organism=Citrus clementina; type=EST; length=602bp
GACGGTTGAATACTTAACATTAGCTTCACGGTTTGGGATGTCGGAGGTCA
GGACAAGATCCGTCCATTGTGGAGGCACTATTTTCAGAACACTCAGGGCC
TCATTTTTGTGGTGGATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGG
GATGAGTTGCACCGAATGTTGAATGAGGATGAATTGAGGGATGCTGTTCT
GCTTGTATTTGCTAACAAACAAGATCTTCCGAATGCAATGAATGCTGCAG
AAATAACTGACAAGCTCGGTCTTCATTCTCTTCGCCAGCGACACTGGTAT
ATCCAGAGCACATGTGCAACCTCTGGAGAGGGTCTTTACGAAGGGTTGGA
TTGGCTTTCCAACAACATCGCTAGCAAGGCTTGAATGAAGCAGTGAAGAT
TCTGGCTCCTCTTTTAGATTTCGTTATGGCTTATACCTATTCTAGGTATT
CTGAAGAAGATAGTTTCCCTTTTGTTCAGTCACTTCTATAACAGCATAAT
GTTTGTTGAAAATCTACTGCTATGTGAAGTATGGATTTTGTATAATCCTA
CATAACTATTAAGATGATGATGCATCTGTTCGGAAAAAAAAAAAAAAAAA
AA
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