FC925153

Overview
NameFC925153
Unique NameFC925153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 34/132 (25.76%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   10 ILNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 369
            I  ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  +L+  NK D  +A++  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct:   66 IAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 34/132 (25.76%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   10 ILNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 369
            I  ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  +L+  NK D  +A++  ++ +  GL+             L  R   +        +G  EG  WLS  I
Sbjct:   66 IAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
The following BLAST results are available for this feature:
BLAST of FC925153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SAR1A_BOVIN6.317e-1125.76GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
SAR1A_MOUSE8.250e-1125.76GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE06FM1 TF Citrus clementina cDNA clone KN0AAP8YE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925153 ID=FC925153; Name=FC925153; organism=Citrus clementina; type=EST; length=602bp
GACGGTTGAATACTTAACATTAGCTTCACGGTTTGGGATGTCGGAGGTCA
GGACAAGATCCGTCCATTGTGGAGGCACTATTTTCAGAACACTCAGGGCC
TCATTTTTGTGGTGGATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGG
GATGAGTTGCACCGAATGTTGAATGAGGATGAATTGAGGGATGCTGTTCT
GCTTGTATTTGCTAACAAACAAGATCTTCCGAATGCAATGAATGCTGCAG
AAATAACTGACAAGCTCGGTCTTCATTCTCTTCGCCAGCGACACTGGTAT
ATCCAGAGCACATGTGCAACCTCTGGAGAGGGTCTTTACGAAGGGTTGGA
TTGGCTTTCCAACAACATCGCTAGCAAGGCTTGAATGAAGCAGTGAAGAT
TCTGGCTCCTCTTTTAGATTTCGTTATGGCTTATACCTATTCTAGGTATT
CTGAAGAAGATAGTTTCCCTTTTGTTCAGTCACTTCTATAACAGCATAAT
GTTTGTTGAAAATCTACTGCTATGTGAAGTATGGATTTTGTATAATCCTA
CATAACTATTAAGATGATGATGCATCTGTTCGGAAAAAAAAAAAAAAAAA
AA
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