FC925153

Overview
NameFC925153
Unique NameFC925153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 369
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 177          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 8.995e-58
Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+R+ EA +EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGL+WLS N+ ++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.534e-57
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + +++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 1.534e-57
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + +++
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.216e-56
Identity = 102/122 (83.61%), Postives = 111/122 (90.98%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NI+FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EA DEL +MLNEDELRDAVLLVF NKQDLPNAM+ AE+TDKL LHSLR R WYIQSTCATSG+GLYEGLDWLSN + S +
Sbjct:   60 NINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSS 181          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 1.876e-55
Identity = 99/122 (81.15%), Postives = 114/122 (93.44%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 381
            NISFTVWDVGGQDKIRPLWRHYF+NT+G+IFVVDSNDR R+ EAR+ L RMLNEDE+R+AVLLVFANKQDLP AM+AAEIT+KLGLHS+RQR WYIQ+TCATSGEGLYEGL+WLS N+ ++A
Sbjct:   60 NISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKNQA 181          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.074e-54
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 363
            NI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVFANKQDLPNAM+ AEIT +LGL SL +R WYIQSTCAT+G+GLYEGL+WL+N
Sbjct:   60 NIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLAN 175          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 3.537e-54
Identity = 100/121 (82.64%), Postives = 105/121 (86.78%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA  EL  ML EDELRDAVLLVFANKQDLPNAM AAE+TDKL L+ LR RHW+IQSTCAT G GLYEGLDWLS  +A K
Sbjct:   60 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 210.305 bits (534), Expect = 6.034e-54
Identity = 96/118 (81.36%), Postives = 110/118 (93.22%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 369
            NISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL  MLNEDEL+DAVLLV ANKQDLPNAMNAAEIT+K+GLHS+  R W+IQ+TCAT+G+GLYEGL+WLSN +
Sbjct:   60 NISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQV 177          
BLAST of FC925153 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 3.311e-52
Identity = 94/121 (77.69%), Postives = 106/121 (87.60%), Query Frame = 1
Query:   16 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 378
            NI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E  +EL +ML EDELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:   60 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
The following BLAST results are available for this feature:
BLAST of FC925153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
ARF1_DROME5.274e-5888.98ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_SCHPO8.995e-5885.12ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF12_CAEEL1.534e-5786.07ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.534e-5786.07ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF1_DICDI2.216e-5683.61ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF_ASHGO1.876e-5581.15ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF_AJECA2.074e-5485.34ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF2_DROME3.537e-5482.64ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_CANAL6.034e-5481.36ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF4_BOVIN3.311e-5277.69ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE06FM1 TF Citrus clementina cDNA clone KN0AAP8YE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925153 ID=FC925153; Name=FC925153; organism=Citrus clementina; type=EST; length=602bp
GACGGTTGAATACTTAACATTAGCTTCACGGTTTGGGATGTCGGAGGTCA
GGACAAGATCCGTCCATTGTGGAGGCACTATTTTCAGAACACTCAGGGCC
TCATTTTTGTGGTGGATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGG
GATGAGTTGCACCGAATGTTGAATGAGGATGAATTGAGGGATGCTGTTCT
GCTTGTATTTGCTAACAAACAAGATCTTCCGAATGCAATGAATGCTGCAG
AAATAACTGACAAGCTCGGTCTTCATTCTCTTCGCCAGCGACACTGGTAT
ATCCAGAGCACATGTGCAACCTCTGGAGAGGGTCTTTACGAAGGGTTGGA
TTGGCTTTCCAACAACATCGCTAGCAAGGCTTGAATGAAGCAGTGAAGAT
TCTGGCTCCTCTTTTAGATTTCGTTATGGCTTATACCTATTCTAGGTATT
CTGAAGAAGATAGTTTCCCTTTTGTTCAGTCACTTCTATAACAGCATAAT
GTTTGTTGAAAATCTACTGCTATGTGAAGTATGGATTTTGTATAATCCTA
CATAACTATTAAGATGATGATGCATCTGTTCGGAAAAAAAAAAAAAAAAA
AA
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