FC925171

Overview
NameFC925171
Unique NameFC925171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_LACSK (Chaperone protein dnaJ OS=Lactobacillus sakei GN=dnaJ PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLK-------GAGMGMGDF---SNPFDLFESLF 667
            DYY VLGV R+AS  EIK AYRKL++ YHPD+NK P+AE KFKE++ AYE LSD +KR+ YD+YG AG+        GAG G G F   +  F  F+ +F
Sbjct:    6 DYYDVLGVGRDASDDEIKKAYRKLSKKYHPDINKAPDAEAKFKEVTEAYEALSDPQKRAAYDQYGHAGMNGGFGGGAGAGQGFGGFGGGAEGFGGFDDIF 105          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEA-------GLKGAGMGMGDFSNPFDLFESLF 667
            A  DYY +LGVS+NA+K EIK AYRKL++ YHPD+NKEP+A +KFKEI  AYEVLSDD+KR+ YD++G A       G +      G FS  F  F+ +F
Sbjct:    2 AKRDYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADPNQGFGGFRSDDFDFGGFSG-FSGFDDIF 100          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSU (Chaperone protein dnaJ OS=Bacillus subtilis GN=dnaJ PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEA----GLKGAGMGMGDFS--NPFDLFESLF 667
            DYY VLGVS++ASK EIK AYRKL++ YHPD+NKE  +++KFKE+  AYE LSDD+KR+ YD++G      G  G G G GDF      D+F S+F
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRAHYDQFGHTDPNQGFGGGGFGGGDFGGFGFDDIFSSIF 100          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMM (Chaperone protein dnaJ OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  395 SDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG-AGM-GMGDFSNPFDLFESLF 667
            +DYY +LGVS++A    +K AYR+LAR YHPD+NK+P AE +FKEI  AYEVLSD + R  YD++GEAGL G AGM  +GD     DLFE+ F
Sbjct:    2 ADYYDLLGVSKDADGDTLKRAYRRLARQYHPDINKDPGAEDRFKEIGRAYEVLSDPQTRGRYDQFGEAGLGGAAGMPDVGDMGGFADLFETFF 94          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG--------------AGMGMGDFSNPFDLFESLF 667
            A  DYY VLG+S++ASK EIK AYRKL++ YHPD+NKE  A++KFKEIS AYEVLSDD KR+ YD++G  G +G              +G G G F    D+F S F
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFE---DIFSSFF 105          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG--------------AGMGMGDFSNPFDLFESLF 667
            A  DYY VLG+S++ASK EIK AYRKL++ YHPD+NKE  A++KFKEIS AYEVLSDD KR+ YD++G  G +G              +G G G F    D+F S F
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFE---DIFSSFF 105          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAS (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG--------------AGMGMGDFSNPFDLFESLF 667
            A  DYY VLG+S++ASK EIK AYRKL++ YHPD+NKE  A++KFKEIS AYEVLSDD KR+ YD++G  G +G              +G G G F    D+F S F
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFE---DIFSSFF 105          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAR (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MRSA252) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG--------------AGMGMGDFSNPFDLFESLF 667
            A  DYY VLG+S++ASK EIK AYRKL++ YHPD+NKE  A++KFKEIS AYEVLSDD KR+ YD++G  G +G              +G G G F    D+F S F
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFE---DIFSSFF 105          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAN (Chaperone protein dnaJ OS=Staphylococcus aureus (strain N315) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG--------------AGMGMGDFSNPFDLFESLF 667
            A  DYY VLG+S++ASK EIK AYRKL++ YHPD+NKE  A++KFKEIS AYEVLSDD KR+ YD++G  G +G              +G G G F    D+F S F
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFE---DIFSSFF 105          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAM (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKG--------------AGMGMGDFSNPFDLFESLF 667
            A  DYY VLG+S++ASK EIK AYRKL++ YHPD+NKE  A++KFKEIS AYEVLSDD KR+ YD++G  G +G              +G G G F    D+F S F
Sbjct:    2 AKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFE---DIFSSFF 105          
The following BLAST results are available for this feature:
BLAST of FC925171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_LACSK2.107e-2354.00Chaperone protein dnaJ OS=Lactobacillus sakei GN=d... [more]
DNAJ_BACTR2.107e-2354.00Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]
DNAJ_BACSU2.107e-2355.21Chaperone protein dnaJ OS=Bacillus subtilis GN=dna... [more]
DNAJ_PROMM2.752e-2358.06Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_STAAW3.594e-2352.34Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAT3.594e-2352.34Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAS3.594e-2352.34Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAR3.594e-2352.34Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAN3.594e-2352.34Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAM3.594e-2352.34Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YD09FM1 TF Citrus clementina cDNA clone KN0AAP3YD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925171 ID=FC925171; Name=FC925171; organism=Citrus clementina; type=EST; length=738bp
GCTCGTGCGCTTCTCTTCCGCTGCTCTCCCTCTCTAAAACCTTTAAGAGG
GAACGAGACGACGGAGAAGATAAGATTAAACGACAACAGTCAGGAAACTC
AGATTAGGCCAGTTGATCAGCCCCTTTTCCCTTGCTAAAACAACTTAGAT
GGCCATTATACCTTGTGGAAGTACATGGGTTGCTCAGTGGGGTATTCGTC
CTCAGTTTATGCTAAGATCCTCTACCCCAAACAGGATGTCAACATGCCAA
TCTGGCATCACAAGCAGGTTAAGCTGTCTGGCTGCTCCAAGTTCAAGCTT
TTTTTCACGCAAGTCCTTCTCTTTGTTATCTTATGCTAGTCCATCTCAGA
CTTCATACCGTCGTAGGGGAGCACGATTGATCGTTAGAGCTGATAGTGAC
TACTATTCAGTTCTAGGGGTGTCAAGAAATGCAAGTAAATCTGAAATTAA
AAGCGCTTATCGGAAGCTTGCAAGGAGTTATCACCCGGATGTAAACAAAG
AACCTAATGCAGAACAGAAGTTCAAGGAAATTAGCAATGCATATGAGGTT
CTGTCAGATGATGAGAAACGTTCTTTATATGACAAATATGGGGAGGCTGG
ACTTAAAGGTGCTGGTATGGGCATGGGGGATTTCAGCAATCCTTTCGATT
TGTTTGAATCACTATTTGAGGGCATGGGTGGTATGGGCGGAATGGGGGGC
ATGGGAAGCAGAGCTTCCAGGAGCAGAGCAGTTGATGG
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