FC925172

Overview
NameFC925172
Unique NameFC925172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length350
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.749e-34
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.352e-34
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.091e-33
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.861e-33
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.861e-33
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.861e-33
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.861e-33
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.861e-33
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV +KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.430e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTI NV AK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.174e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV  KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC925172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_ARATH3.749e-3498.65Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO8.352e-3497.30Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE1.091e-3397.30Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST1.861e-3395.95Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO1.861e-3395.95Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.861e-3395.95Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE1.861e-3395.95Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL1.861e-3395.95Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ2.430e-3395.95Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR3.174e-3395.95Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YE20FM1 TF Citrus clementina cDNA clone KN0AAP8YE20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925172 ID=FC925172; Name=FC925172; organism=Citrus clementina; type=EST; length=350bp
CATCTGCAGCCCCTTTTATCTTCGTGAAAACCCTAACGGGAAAGACCATA
ACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCTAGGCCAAGAT
CCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCG
GAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAG
GAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCG
TAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAATA
AGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAG
back to top