FC925172

Overview
NameFC925172
Unique NameFC925172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length350
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC925172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_RABIT9.234e-3394.59Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY9.234e-3394.59Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY9.234e-3394.59Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG9.234e-3394.59Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR9.234e-3394.59Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA9.234e-3394.59Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE9.234e-3394.59Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE9.234e-3394.59Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA9.234e-3394.59Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU9.234e-3394.59Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE20FM1 TF Citrus clementina cDNA clone KN0AAP8YE20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925172 ID=FC925172; Name=FC925172; organism=Citrus clementina; type=EST; length=350bp
CATCTGCAGCCCCTTTTATCTTCGTGAAAACCCTAACGGGAAAGACCATA
ACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCTAGGCCAAGAT
CCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCG
GAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAG
GAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCG
TAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAATA
AGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAG
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